Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0349 ATGTCCACCTCAAGAACCTCAGATTCTTCCCTCAAAGGATACGAGTTCAACCAAAACCAAATGAATCTGTCTCTCCTTCAACGAAACATGTCTCCTTCTGGCGAGAGAAGAGGCCGAGGAAAGCAAGCAGAACCTGGAAGGTTTCTTGGAGTAAGAAGGCGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCATATATTCCAAAGATACCAATACCAATACCAGCATTTTCCACAATGCTCAACCTCTCTTGCCACCTTCACATAACACTCACAACACACTACCAACCAATCAAAACCTTGGTAACATTAACATCACTTCCCACATTGAAAACCCTTGTGACATGATGAGTGCATATGGGTCACCTCCTCAGGATGATAATTTCTTCTTCTCCAGTGATTCTAACTCGGGCTATCTTGAATGCATAGTTCAGGATAACTGTTTCAGGAAGAGCAATGCCAGTGCTTCAAGTCATGAACTTAAGGCTGGCCACGTTTATTACTCAAACTCCATGCAGGCTCACCCACATTTTGACACCACTCAAGAAGCCTTGAACATGCATACAACAGTGGCCTCAAACTATGGATTATGGGATAATAATCAGCAATCATGGGATTGCAGTTCCAATGAACTAGCAGCTATGTTTAAAAATCCATCAAGGGCTGGGGAAGGGTGCATGAATGCATTGTATACCTTCACTGATAGTTCAAGCTATGGGTTCATGACTCAGGCTGAGGCTGTTTCTTCAACTACCTGTTCTACATCACTTCCTCCCTTTGGGGATATTCTTTATGAGTTATTCAAAAGCAAGGTGGTCGTATGGATTGCTAAAATTCTCAAGGATGGCCATGGTTTATTCAAGATCAAAGGGATGGCCACAAAAAAGATTATATGA 1011 0.4273 MSTSRTSDSSLKGYEFNQNQMNLSLLQRNMSPSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAQEAALAYDRAALSMKGCQARTNFIYSKDTNTNTSIFHNAQPLLPPSHNTHNTLPTNQNLGNINITSHIENPCDMMSAYGSPPQDDNFFFSSDSNSGYLECIVQDNCFRKSNASASSHELKAGHVYYSNSMQAHPHFDTTQEALNMHTTVASNYGLWDNNQQSWDCSSNELAAMFKNPSRAGEGCMNALYTFTDSSSYGFMTQAEAVSSTTCSTSLPPFGDILYELFKSKVVVWIAKILKDGHGLFKIKGMATKKII 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0349 336 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 301 - -
Aed9g0349 336 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Aed9g0349 336 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Aed9g0349 336 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Aed9g0349 336 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Aed9g0349 336 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Aed9g0349 336 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Aed9g0349 336 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Aed9g0349 336 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 301 - -
Aed9g0349 336 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0349 Aed-Chr9 2403047 2405600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0349 1 188 AP2-EREBP Transcription Factor Family AT5G18560 45.749 4.70e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed9g0349 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0349 - - gmx:102664746 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2400 6 25648300 25648965 Aed9g0349 9 2403047 2405600 PCT