Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0341 ATGGCGAGGCCTTCCAAGCCAAACTCATCTTCCGATGAAGCGCTCTCCAATTCTTCCAGTTCTTCTGAGGAAGAGGAGCAGGTCAACCAGCAGGTCAACGAAGAGGAAGACGAGGAGGAGCTCGAGGCGGTGGCGCGCCCCGCCAGTTCCGACGACGATGACGTAGTCGCCGGCGACAATCCTCCGGACTCCGATGAAGATCCCGCCACCGACGATGACCAGGATGGGGATAATGTTGATCCCGAAATTAGTAAGCGAGAGAAGGCTAGATTAAAAGAAATGCAGAAAATGAAGAAACAGAAGATTCAGGATATACTGGATGCACAGAATGCGGCCATTGACGCTGACATGAACAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAACTGTTTGCTCATTTTGCTAAAGGGGATCAATCTTCGTCTCAGAAGAAGTCAAAGGGAAAGGGTCGCCATGCATCCAATTTCACTGAGGAAGAGGAAGATGAAGAATACCTAAAAGGAGAAGAAGATGGTCTAGCAAACACACGTCTGGTGACACAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATAAGACTGTATGAGAATGGTATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATTTCTTTATTAGGTTATTTGAACGAGTTTAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTATTCGTGCAATTAAGTTTCTTGGCAACCCCGATGAAAGGAGACATATAAGAGATGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTCACAAGTTTTGAAATGGCAATCAAAGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTACCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAATTCTGCGGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACATGAGGTTGTTCAACAATTACACAAGGTCCTCCGCCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAAATGCAGAAACAGTATTATAAAGCACTACTTCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGGAAGCGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAGGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGATATCTATATTGTCGCATTGATGGAAATACTGGTGGGGACGATCGAGATGCTTCCATTGATGCTTTTAACAAACCAGGAAGTGAGAAATTTGTCTTCCTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTTATACAATTGAAGAGAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAGCAAGGACGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATCATTGCTAAAGGAGAAGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACCGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGATGAGAACAGATTTGATATAAAAAAAATTGTGAGTGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTTAAGCAAACACTGCGCCAAGGTGGTCCTACCAAACCGAAAGAGCCCCGTATTCCCAGGATGCCCCAGTTACATGATTTCCAGTTTTTCAACACACAAAGATTGAGTGAGTTGTACGAAAAGGAAGTACGCTATCTAATGCAAAAACACCAGAAAAATCAGATAAAGGACTCGATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACCGCTGAAGAGTTGGAAGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCATGGAGCCGGAGGGATTTTAATACTTTCATAAGGGCCTGCGAAAAATATGGCCGAAATGATATAAAAGGTATTGCGTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGAGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGAAAGAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAGTATGGACAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAACTGGCTAGAAGGTGTGACACCCTCATTCGACTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAAAAACTTGCCAAAAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTTTGAAGAAGCGCAAGCAGTTAAACATGGATGATTATGCAAGCACGGGGAAGAGAAGAAAGTAA 3093 0.421 MARPSKPNSSSDEALSNSSSSSEEEEQVNQQVNEEEDEEELEAVARPASSDDDDVVAGDNPPDSDEDPATDDDQDGDNVDPEISKREKARLKEMQKMKKQKIQDILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSKGKGRHASNFTEEEEDEEYLKGEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLNEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVIRAIKFLGNPDERRHIRDELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFNSAETFDEWFQISGENDQHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQKHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKGIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTESPSLKKRKQLNMDDYASTGKRRK 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0341 1030 MobiDBLite consensus disorder prediction 1006 1030 - -
Aed9g0341 1030 Pfam Helicase conserved C-terminal domain 496 584 IPR001650 -
Aed9g0341 1030 SMART ultradead3 189 381 IPR014001 -
Aed9g0341 1030 CDD SANT 810 854 IPR001005 -
Aed9g0341 1030 MobiDBLite consensus disorder prediction 715 740 - -
Aed9g0341 1030 SMART helicmild6 524 629 IPR001650 -
Aed9g0341 1030 Gene3D ISWI, HAND domain 708 806 IPR036306 GO:0003677|GO:0006338|GO:0031491
Aed9g0341 1030 Gene3D - 807 861 - -
Aed9g0341 1030 Coils Coil 91 111 - -
Aed9g0341 1030 MobiDBLite consensus disorder prediction 979 995 - -
Aed9g0341 1030 SUPERFAMILY Homeodomain-like 810 860 IPR009057 -
Aed9g0341 1030 CDD SF2_C_SNF 494 596 - -
Aed9g0341 1030 Pfam SLIDE 864 974 IPR015195 GO:0003677|GO:0005634|GO:0006338
Aed9g0341 1030 MobiDBLite consensus disorder prediction 56 78 - -
Aed9g0341 1030 MobiDBLite consensus disorder prediction 1 96 - -
Aed9g0341 1030 MobiDBLite consensus disorder prediction 1 27 - -
Aed9g0341 1030 Coils Coil 22 42 - -
Aed9g0341 1030 Coils Coil 964 991 - -
Aed9g0341 1030 Gene3D iswi atpase 862 894 - -
Aed9g0341 1030 MobiDBLite consensus disorder prediction 144 162 - -
Aed9g0341 1030 MobiDBLite consensus disorder prediction 140 173 - -
Aed9g0341 1030 Pfam HAND 720 802 IPR015194 GO:0003677|GO:0006338|GO:0031491
Aed9g0341 1030 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 585 1030 - -
Aed9g0341 1030 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 584 - -
Aed9g0341 1030 PANTHER SNF2/RAD54 HELICASE FAMILY 585 1030 - -
Aed9g0341 1030 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Aed9g0341 1030 SUPERFAMILY Homeodomain-like 862 984 IPR009057 -
Aed9g0341 1030 CDD DEXHc_SMARCA1_SMARCA5 190 410 IPR044754 GO:0005524
Aed9g0341 1030 MobiDBLite consensus disorder prediction 28 42 - -
Aed9g0341 1030 Pfam SNF2-related domain 206 473 IPR000330 GO:0005524|GO:0140658
Aed9g0341 1030 Gene3D - 186 417 IPR038718 -
Aed9g0341 1030 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 672 IPR001650 -
Aed9g0341 1030 MobiDBLite consensus disorder prediction 979 1030 - -
Aed9g0341 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 654 IPR027417 -
Aed9g0341 1030 SMART sant 909 970 IPR001005 -
Aed9g0341 1030 SMART sant 807 856 IPR001005 -
Aed9g0341 1030 Gene3D - 587 669 IPR027417 -
Aed9g0341 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 408 IPR027417 -
Aed9g0341 1030 Gene3D - 895 998 - -
Aed9g0341 1030 Gene3D - 418 584 IPR027417 -
Aed9g0341 1030 ProSiteProfiles SANT domain profile. 806 858 IPR017884 -
Aed9g0341 1030 PANTHER SNF2/RAD54 HELICASE FAMILY 9 584 - -
Aed9g0341 1030 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 719 809 IPR036306 GO:0003677|GO:0006338|GO:0031491
Aed9g0341 1030 MobiDBLite consensus disorder prediction 79 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0341 Aed-Chr9 2337571 2345232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0341 493 597 RAD5 or RAD16-like Gene Family AT5G43530 33.621 7.74e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed9g0341 SNF2_N 8e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0341 K11654 - gmx:100782649 1873.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0341 9 2337571 2345232 Aed9g0341 9 2337571 2345232 ECH
Aed6g2405 6 25678673 25686944 Aed9g0341 9 2337571 2345232 PCT