Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0338 ATGGAAGGTTCTGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCATTCGCCAGGACGTTCAACATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTGGCTCAAGTTTGCACGAACTGTGGTGTCAGAATGGGAGAATATTTCTGCAACATCTGCAATTTCTTCGATGATGATACTGGGAAAGAACAATTTCATTGTGATGAATGTGGGATTTGTAGAGTTGGTGGTCGTGAGAATTATTTCCACTGCACTAAGTGTGGGTCTTGTTATTCAACTACTCTGCGTGATAATCATTCGTGTGTGGAGAACTCCATGAGACATCATTGTCCCATTTGTTATGAGTACCTTTTTGACTCATTGAAAGATACTAATGTTATGAAATGTGGCCACACAATGCATAATGAATGTTACGAAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGATGATGGACATGTCTAGGGCATGGATGAGAATTGATGAAGAGATTGAAGCAACAGTCATGCCTGATGATTATCGGAACAGAAAGGTGTGGATACTCTGTAATGACTGCAATGACACCACCGAAGTTTACTTCCACATTCTTGGGCAAAAATGTGGTCACTGCAATTCATATAACACTCGGGCTGTAGCTCCTCCTGTTCTTCCTGAATGA 777 0.4273 MEGSVLERLDFGKMGYGIRAPCCNELYFCRHCHNEATSMLSNPFDRHELIRQDVQHVVCSVCDTEQPVAQVCTNCGVRMGEYFCNICNFFDDDTGKEQFHCDECGICRVGGRENYFHCTKCGSCYSTTLRDNHSCVENSMRHHCPICYEYLFDSLKDTNVMKCGHTMHNECYEEMLKRDKYCCPICSKSMMDMSRAWMRIDEEIEATVMPDDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCNSYNTRAVAPPVLPE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0338 258 Pfam CHY zinc finger 18 89 IPR008913 GO:0008270
Aed9g0338 258 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 257 - -
Aed9g0338 258 ProSiteProfiles Zinc finger RING-type profile. 144 187 IPR001841 -
Aed9g0338 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 216 IPR013083 -
Aed9g0338 258 SMART ring_2 144 186 IPR001841 -
Aed9g0338 258 ProSiteProfiles Zinc finger CHY-type profile. 2 77 IPR008913 GO:0008270
Aed9g0338 258 SUPERFAMILY Zinc hairpin stack 80 137 IPR037275 -
Aed9g0338 258 Pfam Zinc-ribbon 191 249 IPR039512 -
Aed9g0338 258 ProSiteProfiles Zinc finger CTCHY-type profile. 79 143 IPR017921 -
Aed9g0338 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 257 - -
Aed9g0338 258 SUPERFAMILY RING/U-box 143 193 - -
Aed9g0338 258 Pfam Ring finger domain 143 186 IPR001841 -
Aed9g0338 258 SUPERFAMILY CHY zinc finger-like 18 78 IPR037274 GO:0008270
Aed9g0338 258 Gene3D - 217 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0338 Aed-Chr9 2323308 2326832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0338 18 257 C2H2 Transcription Factor Family AT3G18290 37.959 4.47e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0338 K10144 - gmx:100812246 540.036