Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0331 ATGGGGTGTGCGTTTGGAAGAGAGGCTTCGAGGGAGGAGAAGAGAGAGGAAGTGAGAGAGGCAAGAGGAGCTGAGGAGGAGGGTAGTAGAGGAGAGGTTGCTGCTGAGAATGAGAACATTGAGAAGGAGAAGAGGACAAGGGCAAGGGGAGAGAGGCGGCGATCTTCGAAGCCGAAGCCGAATCCGAGGTTGAGCAATCCTCCTAACCATGTTCGTGGTGAGCAGGTCGCAGCTGGATGGCCCTCTTGGCTCTCTAAGGTTGCTGGTGAAGCTATCAATGGACTGACCCCTCGGAGGGCTGACACTTTTGAGAAGATTGATAAGATCGGGCAAGGTACATACAGCAACGTTTACAAAGCTAGGGATACTTTAACAGGGAAAATTGTTGCTCTAAAGAAGGTCCGTTTTGACAATTTAGAGCCTGAGAGTGTAAAGTTCATGGCCAGAGAGATTTTGATTCTCCGTCGTCTGGATCATCCCAATGTCATCAAACTGGAAGGCTTAGTGACTTCTAGAATGTCATGCAGTTTATATCTGGTGTTTGAATACATGGTGCATGATCTGGCTGGACTTGCCACAAACCCGGCAATTAAGTTCACAGAGTCTCAGGTAAAATGTTACATGCATCAGCTGTTTTCTGGACTGGAACATTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAATGATGGAATTCTTAAGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAGCACCCTATGACCAGTAGAGTGGTTACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGAATATAGTGTTGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAACTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGGTGGAGCAGCTACACAAGATATTTAAACTATGCGGTTCTCCTTCTGACGAATATTGGAAAAAGTCAAAGTTGCCACATGCTACCATTTTTAAGCCCCAACAGTCATACAAGCGATGCATTGCAGAGACATTTAAAGATTTTCCTCCATCATCCTTGCCTCTTATTGATACCCTTCTCACAATTGATCCAGATGAACGTTTGACTGCCACTGCTGCATTGCATAGTGAATTCTTTACAACAAAACCATATGCTTGTGAGCCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGTTACGGGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAAAGGTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAGTTCCAGTTCCAGAGGCCAATGCTGAACTGCAAGCAAATATCGATAGACGGCGGCTGATCACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCGCCTCCCCACCAAGATGGAGCTTTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAGTGTTTGATCCTCCTGATGTTCCATTTAGCTCCACAAACTTCTCACAACCTAAAGCAAATATACAAACCTGGTCCGGCCCGTTAGTAGATACTTCTGGTGTGGGAGCACCAAGGAGAAAGAAGAAACATGGCAAGTCATGA 1629 0.4616 MGCAFGREASREEKREEVREARGAEEEGSRGEVAAENENIEKEKRTRARGERRRSSKPKPNPRLSNPPNHVRGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKIDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTESQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATEYSVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYKRCIAETFKDFPPSSLPLIDTLLTIDPDERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKGNADGVKKSRPRERVGRGVPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHMDPVFDPPDVPFSSTNFSQPKANIQTWSGPLVDTSGVGAPRRKKKHGKS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0331 542 MobiDBLite consensus disorder prediction 468 542 - -
Aed9g0331 542 Gene3D Phosphorylase Kinase; domain 1 91 185 - -
Aed9g0331 542 Pfam Protein kinase domain 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g0331 542 PANTHER CELL DIVISION PROTEIN KINASE 4 541 - -
Aed9g0331 542 Coils Coil 33 53 - -
Aed9g0331 542 Coils Coil 7 27 - -
Aed9g0331 542 MobiDBLite consensus disorder prediction 1 73 - -
Aed9g0331 542 MobiDBLite consensus disorder prediction 504 525 - -
Aed9g0331 542 MobiDBLite consensus disorder prediction 422 442 - -
Aed9g0331 542 ProSiteProfiles Protein kinase domain profile. 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g0331 542 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g0331 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Aed9g0331 542 Gene3D Transferase(Phosphotransferase) domain 1 186 425 - -
Aed9g0331 542 SUPERFAMILY Protein kinase-like (PK-like) 98 392 IPR011009 -
Aed9g0331 542 CDD STKc_CDK9_like 103 387 - -
Aed9g0331 542 PANTHER CYCLIN-DEPENDENT KINASE 4 541 - -
Aed9g0331 542 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Aed9g0331 542 MobiDBLite consensus disorder prediction 7 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0331 Aed-Chr9 2294226 2300017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0331 98 425 Core Cell Cycle Gene Families AT5G10270 50.581 1.51e-114 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed9g0331 Pkinase 2.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0331 K08819 - gmx:100779413 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0331 9 2294226 2300017 Aed9g0331 9 2294226 2300017 ECH
Aed6g2411 6 25715806 25720474 Aed9g0331 9 2294226 2300017 PCT