Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0329 ATGGGGCTAATGAGAAGCATGAGATCGCGGTCACACCGTGTGGTGCAGGAGCAAGAAGAGTGCGTCGGGGATAGTATGCGACAGAGTTGTTGGGCGAACATGCCCCAAGAGCTTCTCCGAGAGGTCCTCCACCGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGGAAGAGCGTCGTAGCCTGCGCCGGCGTGTGCCGCAGCTGGAGACAAATCACTAAAGACATTGTCAAAACACCCGAACTTTCCTCCAAGATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTTCGCTGCTTTATAAAGCGCAACCGGTCCACCCAAACATACCATTTGTTTCTCAGTTTAGCCACTACGCTAGCTGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATGTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACCAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGAGCAAAGATTATGAAAAGTCGCTCCACAAGGCTGGTGAGTCTAAAACAAGTTTCACCGAAGGTCCCTACAGGCAACTATCCAGTGGCCCACATCTCATATGAATTGAATGTGCTCGGCTCCAGGGGGCCTAGGAGAATGCACTGTGTCATGGATTCCATTCCTGCCGCTGCAATTGAACCTGGAGGTGTAGCACCTACACAGACCGAGTTTTCTCTTAACAACATAGACATGTTTCCTTCATTCTCCTTTTTTCGATCAAAATCAATTCGTGTGGAAAATTCAGTGTCTGGGCCATTGGTTGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCCCCTAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTCCATGGACGGGTGACAATAGCCTCGGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAATGGACCTGCTGGACCAGAACATGATAAGATTATCCTCCAGTTTGGAAAAATTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATCTCGGCATTTCAGGCATTCGCAATGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1152 0.4861 MGLMRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLHRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYHLFLSLATTLAEDGKFLLAARKCRRPTCTDYIMSLDADDMSKGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVSLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPAAAIEPGGVAPTQTEFSLNNIDMFPSFSFFRSKSIRVENSVSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKIGKDLFTMDYRYPISAFQAFAMCLSSFDTKIACE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0329 383 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Aed9g0329 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Aed9g0329 383 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Aed9g0329 383 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Aed9g0329 383 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Aed9g0329 383 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Aed9g0329 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Aed9g0329 383 Pfam Tub family 92 378 IPR000007 -
Aed9g0329 383 Gene3D Tubby Protein; Chain A 88 383 IPR025659 -
Aed9g0329 383 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 6 383 - -
Aed9g0329 383 PANTHER TUBBY-RELATED 6 383 - -
Aed9g0329 383 SUPERFAMILY Tubby C-terminal domain-like 80 383 IPR025659 -
Aed9g0329 383 Pfam F-box domain 31 78 IPR001810 GO:0005515
Aed9g0329 383 Gene3D - 24 84 - -
Aed9g0329 383 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Aed9g0329 383 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0329 Aed-Chr9 2272944 2278163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0329 8 383 TUB Transcription Factor Family AT2G47900 73.087 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed9g0329 Tub 6.7e-111 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0329 K19600 - gmx:100815464 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0329 9 2272944 2278163 Aed9g0329 9 2272944 2278163 ECH
Aed6g2413 6 25724533 25727150 Aed9g0329 9 2272944 2278163 PCT