Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0320 ATGGCAAGTGGGTTTGGGGAATCCCCAAGCCCTTCCTACTTCAACAACAACAATAATAATAACAGTGATGCTGCCAATTTTGAATGCAACATTTGCTTTGAATTAGCGCAAGACCCGATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTCCACTTTCACTCACAATCACGAGAATGCCCCGTGTGCAAGGCTCTCGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGACATCCACTGATCCAAGATCAAAATCTATTCCCGGCGTTAACATCCCGCATCGTCCAGCTGGTCAGAGGCCTGAAACTGCTCCTCCACCTGAAACAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGCTTGGGAGGATTTGCGCCACCACCAATGGCAACAACAAGATTTGGGAATTTTGCATTGTCCACAGCATTTGGTGGTTTTATACCATCCTTATTCAACTTTCAGATGCATGGGTTTCATGATGCCGCCATGTATGGGGGAGGGGCTGCTTTTCCTCATGGATTTGCTAATACATTTCATGGTGTCCATGCTCATGGATTCCCTCTGCGCACCCATCAACGGCAACAAGATTTTTATTTGAAGAAGCTGCTTATATTTATTGTTTTCTGTGTTGTTCTTGCTTTTATATGGCGATAG 687 0.4469 MASGFGESPSPSYFNNNNNNNSDAANFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGFAPPPMATTRFGNFALSTAFGGFIPSLFNFQMHGFHDAAMYGGGAAFPHGFANTFHGVHAHGFPLRTHQRQQDFYLKKLLIFIVFCVVLAFIWR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0320 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed9g0320 228 SMART ring_2 29 69 IPR001841 -
Aed9g0320 228 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Aed9g0320 228 SUPERFAMILY RING/U-box 26 82 - -
Aed9g0320 228 PANTHER OS12G0636000 PROTEIN 2 227 - -
Aed9g0320 228 MobiDBLite consensus disorder prediction 83 114 - -
Aed9g0320 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 83 IPR013083 -
Aed9g0320 228 CDD RING-HC_AtRMA_like 27 71 - -
Aed9g0320 228 Pfam Zinc finger, C3HC4 type (RING finger) 29 69 IPR018957 GO:0046872
Aed9g0320 228 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0320 Aed-Chr9 2236562 2239929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0320 17 227 C3H Transcription Factor Family AT2G23780 57.798 4.27e-85 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0320 K10666 - gmx:100527488 431.795