Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0309 ATGACGGAACCTCAGAATCCTTCACCATTGACACATTCTTCAGCAGCAGAAACCGCACCTCAGCCTCAACCACTGCCACCTCTCAAAAAGAAACGAAGCCTCCCTGGAATGCCAGATCCGGATGCTGAAGTGATTGCTTTGTCCCCGAAGACATTGATGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAAGGGTTCCAACGCGACCAGAATCTACAGCTTCACCGTCGCGGTCACAACCTGCCGTGGAAGCTGCGGCAGCGAGGGAGCCAAGAACCGCGGAAGAAAGCTTACGTGTGTCCCGAACCTTCCTGCGTCCACCACAACCCCGCCAGAGCCCTCGGCGACCTCACCGGCATCAAAAAGCACTTCTGCAGAAAACACGGTGAAAAAAAGTGGAAATGCGAACGCTGCACTAAGCAATACGCCGTACACTCCGATTGGAAGGCTCATATGAAAACTTGCGGCACCAGAGAGTACCGGTGCGACTGCGGTACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACCGAGCATTTTGCGATGTTTTAGCGCAAGAGAGCGCGAGGGCCCAGGTCCAAGCCCAAGCCCAGGCCCAAGGTGGTAGCAATAGCAACGTGGTTGTGGTTTCTTCGCCGCCCACGCCTCCACTTACTCCCTCTGCGTCCGTGGTGTCTCCAACTTTGTCCATTCAGAGCTCAGAAATTCCGGAAAACCCATCAACGAAGCTGTCACCGACGTCTCCAAGCGCAACGTGTTTCGTAACAAACAGCCGCAGCAGTAGTAGTACCACCCCTTCCAGTTCCACTACTTGCACCACTGTTTTCGCGAGTGTGTTGGCACCGTCCACAACACAATCACAATCACAATCACCATCACCATCAACTTCCTCATTCTCCAACCTGATGTCAAACTTGGCTCGCTCGGATAACCCCAATAATGGCATTATTATGAGAGAACCCACATCCCTCTCTCTCTCTACACCACTCTATCTCTCCAACAACATTGACCCTCTTCATTACACCGCAGCATCACCTCAACCTGCACTATCTGCCACTGCACTACTCCAAAAGGCAGCCCAAATGGGTGCTTCAAATGCATCCATTCTTCGTGGCTTAGGCGAGGGTGTTAACATTAATGCCACAACAACACTGCAATGGAACGGCCAAGTGAAGCAAGAGAATCATATTCCAGAGGTGGATAACCTTGGGCTTGGGCTTCTCTGTGGGAGTGGGGGTGTGCCAGATGTGATGATGGGCCAGCCCATGACCCGTGATCTTCTTGGTCTGAGCATCGGTACTGGCGGAGCAAGCAGGGGTAGTCTCTCTGCTCTGCTCAACACTTTTGGAGGAGGCAACTTTGATTCATCCGGTAACGGAGGAGCTCACCGGTAG 1398 0.5286 MTEPQNPSPLTHSSAAETAPQPQPLPPLKKKRSLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSQEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCTKQYAVHSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESARAQVQAQAQAQGGSNSNVVVVSSPPTPPLTPSASVVSPTLSIQSSEIPENPSTKLSPTSPSATCFVTNSRSSSSTTPSSSTTCTTVFASVLAPSTTQSQSQSPSPSTSSFSNLMSNLARSDNPNNGIIMREPTSLSLSTPLYLSNNIDPLHYTAASPQPALSATALLQKAAQMGASNASILRGLGEGVNINATTTLQWNGQVKQENHIPEVDNLGLGLLCGSGGVPDVMMGQPMTRDLLGLSIGTGGASRGSLSALLNTFGGGNFDSSGNGGAHR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0309 465 MobiDBLite consensus disorder prediction 284 319 - -
Aed9g0309 465 SMART c2h2final6 134 154 IPR013087 -
Aed9g0309 465 SMART c2h2final6 99 129 IPR013087 -
Aed9g0309 465 SMART c2h2final6 58 80 IPR013087 -
Aed9g0309 465 MobiDBLite consensus disorder prediction 1 42 - -
Aed9g0309 465 MobiDBLite consensus disorder prediction 196 213 - -
Aed9g0309 465 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 458 - -
Aed9g0309 465 MobiDBLite consensus disorder prediction 1 19 - -
Aed9g0309 465 MobiDBLite consensus disorder prediction 223 271 - -
Aed9g0309 465 Gene3D Classic Zinc Finger 112 192 - -
Aed9g0309 465 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 24 458 - -
Aed9g0309 465 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Aed9g0309 465 Pfam Zinc-finger of C2H2 type 58 80 - -
Aed9g0309 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Aed9g0309 465 MobiDBLite consensus disorder prediction 196 271 - -
Aed9g0309 465 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Aed9g0309 465 Gene3D Classic Zinc Finger 38 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0309 Aed-Chr9 2158225 2161978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0309 29 455 IDZ Gene Family AT5G66730 48.871 4.47e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed9g0309 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0309 K25869 - gmx:100800089 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0309 9 2158225 2161978 Aed9g0309 9 2158225 2161978 ECH