Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0249 ATGGCTCGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAGGTCACTTACTCCAAACGACGGAATGGACTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGGAAACTCCACGAGTACATCAGCCCCTCCGCCTCAACAAAGCAGTTCTTCGATCAATACCAGATGACTCTAGGAGTCGATCTCTGGAACTCTCATTACGAGAATATGCAAGACAACTTGAAGAAACTCAAAGACGTTAATAGGAATCTTCGTAAGGAGATTAGGCAGAGGATGGGAGATTGTCTCAACGATCTGGGCATGGAAGATCTCAAGCTCCTCGAGGAAGAAATGGACAAGGCCGCTAAGGTTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAAAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGGTTTGCATTGATAGACAATGGAGGGGAGTATGAGTCTGTGATCGGATTCTCAAATTTGGGTCCACGCATGTTCGCATTGAGCCTACAGCCAACCCATACTAGCGGACCAGCTGCACCCTCTGATCTTACCACTTACCCCTTACTTTTCTAG 678 0.4661 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSASTKQFFDQYQMTLGVDLWNSHYENMQDNLKKLKDVNRNLRKEIRQRMGDCLNDLGMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIDNGGEYESVIGFSNLGPRMFALSLQPTHTSGPAAPSDLTTYPLLF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0249 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed9g0249 225 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Aed9g0249 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed9g0249 225 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Aed9g0249 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed9g0249 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed9g0249 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed9g0249 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed9g0249 225 Coils Coil 151 171 - -
Aed9g0249 225 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Aed9g0249 225 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed9g0249 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Aed9g0249 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed9g0249 225 PANTHER APETALA3 1 222 - -
Aed9g0249 225 Coils Coil 77 104 - -
Aed9g0249 225 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0249 Aed-Chr9 1785738 1790213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0249 1 224 MADS-box Gene Family AT3G54340 55.411 1.15e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed9g0249 K-box 5.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0249 K09264 - gmx:547720 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0249 9 1785738 1790213 Aed9g0249 9 1785738 1790213 ECH