Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0247 ATGAAGATCCAGTGCGACGTTTGTGACAAACAGCAAGCCTCTCTGTTCTGCACCGCCGACGAAGCCGCCCTATGCGACGGCTGCGACCACCGCGTCCACCACGCCAACAAGCTAGCCTCGAAACACCAACGGTTCTCCCTCAGCCACCCCTCTGCAAAACATTTTCCTCTCTGCGATGTTTGTCAGGAGAAAAGAGGTTTTGTGTTTTGTCAGGAAGATAGAGCGATTCTATGCAAAGACTGCGACTTGCCCATTCATTCTGCCAACGAACTCACCAAGAAACATAACAGGTTTCTTCTCACTGGGATTAAGTTTTCTGCTAACGCCACGCCTTATTCACCTAAGCCTTCGCTAACAAATAAAGAAAAAGAAGAAGAAGAAGGTGGTTTCACAGGTAGCAGCAGCATATCAGACTACTTGATAAACACTATCCCTGGCATGATGTTCGAAGATTTTCTCGATTCACATTCTGTTCCCTTTGCTTGCTCCTCCAAGAGTAGTAATGATGATGGAAACATGGTTTCGTTCTCAGCCGGTGGTGGGATCTGGGTTCCACAAGCACCACAAATGAGAACAAGTTTGGGGCATGATAACTTCATGGTTCCACAGATGACCCCAACCAAGACCAAGAGATCCAGGCTTCTATGCTAA 651 0.4747 MKIQCDVCDKQQASLFCTADEAALCDGCDHRVHHANKLASKHQRFSLSHPSAKHFPLCDVCQEKRGFVFCQEDRAILCKDCDLPIHSANELTKKHNRFLLTGIKFSANATPYSPKPSLTNKEKEEEEGGFTGSSSISDYLINTIPGMMFEDFLDSHSVPFACSSKSSNDDGNMVSFSAGGGIWVPQAPQMRTSLGHDNFMVPQMTPTKTKRSRLLC 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0247 216 MobiDBLite consensus disorder prediction 113 132 - -
Aed9g0247 216 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Aed9g0247 216 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Aed9g0247 216 Gene3D Classic Zinc Finger 1 100 - -
Aed9g0247 216 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 190 - -
Aed9g0247 216 CDD Bbox1_BBX-like 57 100 - -
Aed9g0247 216 CDD Bbox1_BBX-like 5 47 - -
Aed9g0247 216 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 190 - -
Aed9g0247 216 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Aed9g0247 216 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed9g0247 216 Coils Coil 216 216 - -
Aed9g0247 216 SMART bboxneu5 53 100 IPR000315 GO:0008270
Aed9g0247 216 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0247 Aed-Chr9 1774115 1775564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0247 1 193 C2C2-CO-like Transcription Factor Family AT1G75540 45.977 4.17e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Aed9g0247 zf-B_box 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0247 - - gmx:100794842 320.472