Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0239 ATGGATGATGCTGGTCATCGTGAAAATGGAAGGCACAAAGCAGCAGAACAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACATCAGCCTTCCATGAAGCAGATTATGTCAATTATGGCTGAAAGAGATGCAGCCATTCAAGAAAGAAATCTGGCCATTTCTGAGAAAAAGTCAGCATATGCTGAGCGTGACATGGCATTCCTGCAGCGAGATGCTGCGATTGCAGAACGAAATAATGCAATTATGGAACGAGATAATGCGATTGCAACTCTTCAGTATCGTGAAAACTCCTTAAGTAGTGGAAGTATGCCATCATGCCCTCCAGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATGCCTCTTACAACACACGGGAAATGCACACAACTGATGCCCTCCCTGCAGCCCCCATCCCTTCTGAGGTTGGGAAATCAAGGCGGGCCAAGCGACCTAAGGAACCGAAGTCAACTTCACCTAATAAGAAAACTTCAAAAGCAGCAGCAAAAAAGGTCAAGAAGGAGAGTGAAGACTTGAATAAGGTTATGTTTGGCAAGGCACATGAGTGGAAGAATAGTCAGGAAATGGTCAATGGAGGTGATGATCTTAACAAGCAGTTAGCTGTGTCAAAGGCTGATTGGAAAGGTCAGGACTTGGGGTTGAACCAAGTGGCTTATGATGAGTCAACCATGCCAGCACCAGTATGCTCTTGTACTGGTGTACTGAGGCAGTGTTACAAATGGGGTAATGGGGGTTGGCAGTCTGCCTGTTGCACAACTACTCTATCTATGTATCCACTTCCTGCAGTGCCCAACAAGAGGCATGCTCGGGTTGGTGGTCGGAAGATGAGTGGGAGTGCTTTCAACAAACTGCTTAGTCGTCTTGCAGCAGAAGGTCATGATCTGTCAAACCCTGTTGACCTCAAGGACCACTGGGCCAAACATGGAACAAACCGATACATCACAATAAAGTAG 1020 0.4627 MDDAGHRENGRHKAAEQYKSAQGQWLMQHQPSMKQIMSIMAERDAAIQERNLAISEKKSAYAERDMAFLQRDAAIAERNNAIMERDNAIATLQYRENSLSSGSMPSCPPGCQISRGVKHIHHPQQQVHHIPNMGDASYNTREMHTTDALPAAPIPSEVGKSRRAKRPKEPKSTSPNKKTSKAAAKKVKKESEDLNKVMFGKAHEWKNSQEMVNGGDDLNKQLAVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0239 339 Pfam GAGA binding protein-like family 1 339 IPR010409 -
Aed9g0239 339 PANTHER - 1 209 IPR010409 -
Aed9g0239 339 PANTHER - 213 339 IPR010409 -
Aed9g0239 339 MobiDBLite consensus disorder prediction 1 15 - -
Aed9g0239 339 SMART GAGA_bind_2 1 339 IPR010409 -
Aed9g0239 339 Coils Coil 338 339 - -
Aed9g0239 339 Coils Coil 66 86 - -
Aed9g0239 339 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 209 - -
Aed9g0239 339 PANTHER PROTEIN BASIC PENTACYSTEINE6 213 339 - -
Aed9g0239 339 MobiDBLite consensus disorder prediction 146 192 - -
Aed9g0239 339 MobiDBLite consensus disorder prediction 159 175 - -
Aed9g0239 339 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0239 Aed-Chr9 1720695 1725200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0239 66 339 BBR or BPC Transcription factor family AT5G42520 64.846 2.26e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Aed9g0239 GAGA_bind 6.7e-110 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0239 9 1720695 1725200 Aed9g0239 9 1720695 1725200 ECH