Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0236 ATGGGAAAATCTAACTCCTGCTTCAAACTAATCACTTGCGGTGGTGATGCGGCGGAGAAGGATGACTACCACCAAATCTCTGAGATCAAGGAATCTAACGATAAACGTGGTTGGAGTTTCCGCAAGAAATCTGCAAAGCATCGTGTGCTTAGCAATACTGTGATAGCAGAGGCCCCATCTTCTGCAAATAAGGAAAGTTCAGAATGTAATAATTTTAATTTTCAACCACTTCCTGAACCTAATGTTGTTGAAAAGATTTACACTACAAATTGCTCTGATGAGAAGCCCCAGTTGTCTTCCTTTGAAAGCTCACAAGTAGATGAAGCAAATGTCATTGAAACTGAGGAGAAGGTGGATGTGAATCCACCAGAGTCTGGTGTCATCATCATCCAGGCTGCTATTAGAGGGTTATTGGCTCAGAGAGAACTACTACATCTTAAGAAAGTAGTGAAATTGCAAGCTGCTGTTCGTGGGCACTTGGTCCGGCGACATGCTATAGGAACCCTGCGTTGTGTTCAAGCCATCATCAAAATGCAGATCCTTGTGCGAGCTCGTTGTGCTCAGAAGTCATATCTGGAAAACCATTTAAACAAGGATGGCAACAGGGATTCCTCAGAAGTTTTGGGAAATGAAAATCTTGTGACCAAATCAAATTACACATCCATTGAGAAGCTGCTTAGCAATAGGTTTGCTAGTCAGCTGTTGGAATCAACACCGAAGAACAAACCTATCCTTGTCAAATGTGATCCTTCTAAATCTGATTCTGCTTGGAAATGGTTGGAAAGGTGGATGTCAGTATCATCAAAAGATATTGCAGAGTGCAAAGAAACTAGTTCTCTGACAGAGCAATCAAGGGAAAGCAAAGATAGCGCTCCCGTGTTTCAATTTGAAACGAGTATTCCTTCTGAGCCTTTTCCCGAAGCAGCTGACTCAAAGCCCACTGTTGAAGATTCACTTCTGCCATCTGAGGATGAAGAAAAGTTGATTACTTATGATGCTAATGACTTTGAGTTTCAAGCAAGCTGCTCCACATCATCTATTGTAAAAGATGACTTGGTACAGGTTCCTCCTGAAGAAAAAATTGCATATGATGCTAAAGTTGCCTCAGCTGATGCTGATTCCTTCCAAAACGAAAAATCAGCATCAGATGCAAGTGCCCCACCAGAGCTTAATTCTCTTCATAAGGAGCCTGAAATTGCCCCACCATCAGAGCATAATTCTCTTCAGAAGGGGACTGAAATTGCTCCACCATCCGAGAACAACTCCCTTCATAAGGGGCCTGAAACTGCCTCACCATCAGAGCTTAATTCTTTTAATCAGAAGCCTGAAATTGATGGCGAGCAGGGAAAACGACCCATGAAAAGATTTGCCTCAGACCAACTAGAGGCTGAAGGAAAGAAACCTGTAAATGGTTCAAGAAAGGTCAGTAATCCTGCATTTGCTGCTGCACAGTCAAAATTTGAAGAGCTGAGTTCAATAGCAAATTCAGGTAGGACAAACAGTCTGTCCTACCAAGATTCAGCTGTTGAATCACAAGGAGATACTGCTTCTGTTGGCAATGATACTGCATATAAATCAAAAGAGTTTGCATTTGAAAATCCTGCTCTTTATCTTTCTAGATTTGCTGGTTCTGAATGTGGCACTGAACTCTCTATTTCTTCCACTCTTGATTCACCTGACATATCAGAGCCTGGAGCTATGGAAAATGAGCGAGATGCCAAAGATTTAGTGGAAGGGATTGGTAATCTTGAGAACACTATAAACCGTGATGATGAGGCCAATGTTTCATGTGTCATCCCAGCTTCTAACCTAGCTACTTCTGTTTTGGATAAGTCGGAGATTGTTGATGACATCAGTGCTAATTTGGGTCACTTGGTGGTAGCTGTGGACTCTGAAGAGCCTGCTATTAAGACTGAGAAAAATGCGCCTGACGTGCAGAGAGAGCTGCCAGAGACTGTTCTGCAAGATTTAAGATCATCTCCAGAAGCTTCACCTAGAAGCCATTTAACTGTCCCTGAATCGCAAGGAACACCTTCAAGTCAAGTGTCTGTGAAACCTAAAGATAGCACAATCAACAAGACTAGATCTGGGAATAAACGTCGGAGCCTATCATTGAGTAACAAATCACCTACAAATCCAAATCATGATTCAGGCTCAAAAGGAAGTAGGGAGCAACTGCCTAAAGATCAGCAGAATGGAAAGAGGCGCAATTCCTTTGGCTCAGTAAAGCCTGATCACAGTGATCAAGAACCTACAGATAACAGTACTAACAATAATTCTGTTCCCCATTTCATGCAAGCTACAGAATCTGCTAGGGCCAAGATTAATGCAAATAATTCTCCAAGATCAAGTCCTGATGTGCATGAACGAGACATTGAAGTTAAGAAGAGACATTCCTTACCTGGTGCCACTGGTAGGCAAGTTTCTCCACGCATCCAACGATCAACATCTAAGGCACAGCAGAGTGCAAAAGGAAACAATGTAAATCCTTCTCAAGTTGAAACTCCTGATAAGGTCTATGCTGTCTGTCTTTTTCATTCATTTGAAGCTATTGATAGTGTCATTTATACTTTCATTTTCATCATGTATTACCACCGGACACTAAATGCAAGACCTCAGCCACTTCCACCATGGGAGGGCCAAGTCATGATATTTTCTGGAGATGTACTGCTGGTGCATGCAGAAGTATCAGAGGAAAAGGTTAGGTTATTCTTATCAGAGGAATCTCCTTCACAGGTTGGGTTAAATTCTCAAGATCACCTCCAAGCAAAGACATCATTGCTGTTGCATCCCAGCGGAGCAGGTTCAGATGACATTCTGCCTCCTGGATTTGAGGGAACTCATGCCTCAAGTCAGATCGAGATTAAGCCATCCCAGATACCAGTTATTAAGTGGACTACTCCTCCAAAGATTTTGCTAAATGCCACATGGCGAGTAGTGTCTGGGGAAGAAAGCAAAGAGGCAGAGGATCAACGTCAGAGGGAGATGAGAGTACTTGAAGCTATTTATCCTCGCATATCTTCTATTCCTCCAAACCCTTCTGTTTCAATGGATGTTGAAGAGTCCCATTGCATGGATGGTCAAGCTGCTTTGATACCAATAACGCCAATTGAGGATGAAGATGCATCAGCAGAAGCATTATCGGATTCCTTGGAACCATTTGATGTTTCACAATCTCTTCAATTAGCTCCTGGTATTTTGAAGGATTCAAACTCTGCTACAAGTATGCAGTTAACTTGTGGTCTTGGATCTGATGTAGCTGCTGCTGCTGCTGCATCTGTTGCTTTAACTAACCTTGTGAAGAGCAATGAACATGGAAATTTGATTGACCATGAATTACTTAATAATATTCTCAACAATCCAGAAGTGATCGAGAAGTTGGTTAGAGATTATGGAGCTACTAATGATTCACAATATGTACATAATGTGGGGTCATCCTTGGCGGCTTTTTCAAATCCTCCTATTCCTATCCAAGGAGAAACCACTACACCTTCATCAGTTGTTTTTTCAGCCACTTCTTCCTATACTCCACAATGGCCTCCTAGGTCTGCAGTGAGTTCAGCTGTTGTTTCTGCTCCCGTTGAGGTCCCCCCTCCTGCAAAAGATGTAAACTACTATAAGAGCTTAATTCAACAACATGGAGGAGATAAACAAGAAACACTTCCATACTCCACCAGTAAACGTCAGATTCATCAGTCAGCAACAAACTATGACACAACCTACAATCATAGAGGTAAAGTGTCAAAACCAAAGATCATGAAGCCCTGTATCTTTTTCAACAGTCCTAGAGGATGTCGGAATGGAGCTAACTGTGCCTACCAGCATGATGCATCATTTCAGCCACGGGGTAATACCGTGTCAGGGATACAAAGTTCAAAGAGGATGAAAATGGATCATGAGATTAGCAGTTAA 3912 0.422 MGKSNSCFKLITCGGDAAEKDDYHQISEIKESNDKRGWSFRKKSAKHRVLSNTVIAEAPSSANKESSECNNFNFQPLPEPNVVEKIYTTNCSDEKPQLSSFESSQVDEANVIETEEKVDVNPPESGVIIIQAAIRGLLAQRELLHLKKVVKLQAAVRGHLVRRHAIGTLRCVQAIIKMQILVRARCAQKSYLENHLNKDGNRDSSEVLGNENLVTKSNYTSIEKLLSNRFASQLLESTPKNKPILVKCDPSKSDSAWKWLERWMSVSSKDIAECKETSSLTEQSRESKDSAPVFQFETSIPSEPFPEAADSKPTVEDSLLPSEDEEKLITYDANDFEFQASCSTSSIVKDDLVQVPPEEKIAYDAKVASADADSFQNEKSASDASAPPELNSLHKEPEIAPPSEHNSLQKGTEIAPPSENNSLHKGPETASPSELNSFNQKPEIDGEQGKRPMKRFASDQLEAEGKKPVNGSRKVSNPAFAAAQSKFEELSSIANSGRTNSLSYQDSAVESQGDTASVGNDTAYKSKEFAFENPALYLSRFAGSECGTELSISSTLDSPDISEPGAMENERDAKDLVEGIGNLENTINRDDEANVSCVIPASNLATSVLDKSEIVDDISANLGHLVVAVDSEEPAIKTEKNAPDVQRELPETVLQDLRSSPEASPRSHLTVPESQGTPSSQVSVKPKDSTINKTRSGNKRRSLSLSNKSPTNPNHDSGSKGSREQLPKDQQNGKRRNSFGSVKPDHSDQEPTDNSTNNNSVPHFMQATESARAKINANNSPRSSPDVHERDIEVKKRHSLPGATGRQVSPRIQRSTSKAQQSAKGNNVNPSQVETPDKVYAVCLFHSFEAIDSVIYTFIFIMYYHRTLNARPQPLPPWEGQVMIFSGDVLLVHAEVSEEKVRLFLSEESPSQVGLNSQDHLQAKTSLLLHPSGAGSDDILPPGFEGTHASSQIEIKPSQIPVIKWTTPPKILLNATWRVVSGEESKEAEDQRQREMRVLEAIYPRISSIPPNPSVSMDVEESHCMDGQAALIPITPIEDEDASAEALSDSLEPFDVSQSLQLAPGILKDSNSATSMQLTCGLGSDVAAAAAASVALTNLVKSNEHGNLIDHELLNNILNNPEVIEKLVRDYGATNDSQYVHNVGSSLAAFSNPPIPIQGETTTPSSVVFSATSSYTPQWPPRSAVSSAVVSAPVEVPPPAKDVNYYKSLIQQHGGDKQETLPYSTSKRQIHQSATNYDTTYNHRGKVSKPKIMKPCIFFNSPRGCRNGANCAYQHDASFQPRGNTVSGIQSSKRMKMDHEISS 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0236 1303 MobiDBLite consensus disorder prediction 655 762 - -
Aed9g0236 1303 MobiDBLite consensus disorder prediction 784 800 - -
Aed9g0236 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 193 IPR027417 -
Aed9g0236 1303 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Aed9g0236 1303 Gene3D - 124 171 - -
Aed9g0236 1303 PANTHER PROTEIN IQ-DOMAIN 32 1 828 - -
Aed9g0236 1303 MobiDBLite consensus disorder prediction 495 517 - -
Aed9g0236 1303 MobiDBLite consensus disorder prediction 371 477 - -
Aed9g0236 1303 MobiDBLite consensus disorder prediction 776 832 - -
Aed9g0236 1303 MobiDBLite consensus disorder prediction 405 443 - -
Aed9g0236 1303 MobiDBLite consensus disorder prediction 444 469 - -
Aed9g0236 1303 PANTHER IQ-DOMAIN 5-RELATED 1 828 - -
Aed9g0236 1303 SMART iq_5 122 144 IPR000048 GO:0005515
Aed9g0236 1303 SMART iq_5 145 166 IPR000048 GO:0005515
Aed9g0236 1303 MobiDBLite consensus disorder prediction 806 832 - -
Aed9g0236 1303 MobiDBLite consensus disorder prediction 657 720 - -
Aed9g0236 1303 Pfam Protein of unknown function (DUF4005) 748 820 IPR025064 -
Aed9g0236 1303 ProSiteProfiles Zinc finger C3H1-type profile. 1250 1278 IPR000571 GO:0046872
Aed9g0236 1303 MobiDBLite consensus disorder prediction 373 387 - -
Aed9g0236 1303 MobiDBLite consensus disorder prediction 1281 1303 - -
Aed9g0236 1303 ProSiteProfiles IQ motif profile. 145 174 IPR000048 GO:0005515
Aed9g0236 1303 Pfam IQ calmodulin-binding motif 126 143 IPR000048 GO:0005515
Aed9g0236 1303 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0236 Aed-Chr9 1687018 1699890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0236 473 824 IQD Protein Family AT1G19870 37.912 1.76e-48 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed9g0236 DUF4005 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0236 - - gmx:100799424 1481.08