Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0228 ATGTCGATTTCGGGCGAGGATCAATCTCATCTACACCTCCATCTTCCATCATCTCAATTCAAATTCGAGCTATTGCATTCCCCTTCTCAACCCAAACCCCATCCCCTTCCTCATTCTCTTTTTCCTAATTTCCCCATCACCTTGAGTCAAAGATATGAAAGCAATGTTTTCAAGTCTCACACAAGTAATACTGAAATTTCTTCTGGTATTAGCGAAATAGTTAATCTCCCTCCCCCAGTTCAAACCGAGCCTAGCATAAGAGGAAAGCAAAATGGTAAATTAAAAGGTTCAAGAAATGCAAAATCTGGGACTCACAGACCAAATGCCGGTATCAATTCCCCTAATTCGGCTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCCTAATCCAGGATGCTAAGGATGGAACCCTGGATCTAAATAGAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTCGAAGGGGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTAGGGCCACGAGAACTGGAAGACCAAGTTAACAGTCTAAAGGCTGAGGTTGATAGTCTATATGCCAAGGATTGCGAACTTGACGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGCAGGAAAGCGAAAGCTCTCAAAAGAACCTTTTTTTGACCAAGGAAGATATTCTTAGTCTACCACGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTTGTTCCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTCCGGCAAAGACAGTACAAAATGATTGTTAGAAGTGCCATTGGCCCAATATATTTGTACCTCTTGAGCAAGGACGACCGAAAGTTTGAGGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCATGGAATAGTGATCCTTACAGAAAGAGGGGTATGAGATTATTAGAGAGCCAACATGATGAAAAAAATCCTTCTGAGAGTTTCAGTTTGCAGGGAACACAAGCATTTGGAATTCAAGAAATTACTCCCACGGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATTCTGGAGTGAGCCAAACAGAATTGTGGGGAAATGAGTAG 1179 0.4088 MSISGEDQSHLHLHLPSSQFKFELLHSPSQPKPHPLPHSLFPNFPITLSQRYESNVFKSHTSNTEISSGISEIVNLPPPVQTEPSIRGKQNGKLKGSRNAKSGTHRPNAGINSPNSAAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELEDQVNSLKAEVDSLYAKDCELDDCIRKKQELLRNLQESESSQKNLFLTKEDILSLPRFQNQEIIAIKAPKACSIEVPDPDEELGFRQRQYKMIVRSAIGPIYLYLLSKDDRKFEDDSVKRVKLMDPSWNSDPYRKRGMRLLESQHDEKNPSESFSLQGTQAFGIQEITPTDFEMEDDYWFQSDSGVSQTELWGNE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0228 392 SMART E2F_TDP_2 123 188 IPR003316 GO:0005667|GO:0006355
Aed9g0228 392 Coils Coil 218 238 - -
Aed9g0228 392 Gene3D - 118 190 IPR036388 -
Aed9g0228 392 PANTHER TRANSCRIPTION FACTOR E2FC 43 392 - -
Aed9g0228 392 SUPERFAMILY E2F-DP heterodimerization region 199 306 IPR037241 -
Aed9g0228 392 Pfam E2F transcription factor CC-MB domain 204 303 IPR032198 GO:0046983
Aed9g0228 392 Gene3D - 195 306 - -
Aed9g0228 392 CDD E2F_DD 199 306 IPR032198 GO:0046983
Aed9g0228 392 Pfam E2F/DP family winged-helix DNA-binding domain 125 188 IPR003316 GO:0005667|GO:0006355
Aed9g0228 392 MobiDBLite consensus disorder prediction 69 117 - -
Aed9g0228 392 MobiDBLite consensus disorder prediction 95 117 - -
Aed9g0228 392 SUPERFAMILY "Winged helix" DNA-binding domain 123 186 IPR036390 -
Aed9g0228 392 PANTHER TRANSCRIPTION FACTOR E2F 43 392 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0228 Aed-Chr9 1604713 1609699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0228 4 391 E2F-DP Transcription Factor Family AT1G47870 43.095 2.00e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aed9g0228 E2F_CC-MB 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0228 K06620 - gmx:100797301 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0228 9 1604713 1609699 Aed9g0228 9 1604713 1609699 ECH