Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0217 ATGACTCTTGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCACCTTCTCGGGTGGAGGAGCTGGTCTCTGTGATGCAAAAGGAGAAAGATGGTGCGGTTAAAAATGCTGCGGATGCGACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAACAAAGATTGCCTTGATCTTTTTATTCAATTAGATGGACTTGGCTTCATTGATAGATGGTTAAAGGATGCCCAAAATTTTGGGATTGATGCAGACGAAAGCTTCGTTGAAGAATCAATCACTGCAATGTTACGTGCAGTTGAAAAGCTGCATATAGACAGTGAGAAGTCAATGTCTTCAGGAATTCACATCACTGTAAGTAATCTTCTTGGCCATCATAGTGCTAGGGTTCAGGATAGAGCAAGAACATTGTTTGACAGCTGGAAGAGAGTTGGAAATGGTGATACTGAATCTCATGATGTGGATCTTGCTAAGGTTGATAATGCAAGTGACCAGAATGTCAGTGAGGAAGGCCAGCCATCTGCTGTGAATGAAGCTGGCATTGATAATGATCATGCATCAGGACTAATTGGAAGTGAAAAATCTCTATTGAGAAGCTCAGACAATTTACCAGTACATAGTTCTGATCATGTGCTCCACTTATCTGCCAGTGCGGAATGTATTGACATCAAAGAGAGATCAGCAAACCATGTTGCTGGTGTTCCATCTTCTGCTCAAGAAGTTGCTCCCACTCATGAAGGATTGCCTATATGCACTACAAGTGAGACCAATTCGGCTGGAACCTGTATCTTTCCCATTCCAAATCAAAGCAGTTTTGAAGGACAGTCAGATGTGGTACAGTTAAGTGACTTAGCTAAAATGGAAAAGCAGGAGCAGAATGTTAATGACCCTCCAGAAAAATTAGGAGCACCAGAGATCTGTTCTGTGTCCTCTAAGCCGGAGCTTAAGCCTGTTTCCATGGTTTCTTGTGAGGAAAAAGCACCAGTATCTATGGAAGAACCAGCTTTAGAGCAAAATGTTGAACACAATGAGGATGATGTTAGTTGTAATAAATTAATTATTTCTGCTAGTATGAGGACACCTGCATCTGATAGGAGTGGGGAAGATGATGTTAGAAATGTAACTAGCATTACACAAGTTTTCAAAGCTGCAGAAAATGATAATGATTGTTGTTCTAAAGCATTGCAGGACACATCAGTCAGTGACAGTAACTTGGGAAATACTGAGGTGTTAGACATGTCTGTCTCTGGAACAGAATATGACACAACATCAAAGGAAGGCAAGGACCATGTTTATAATGATGAAGATACATCAATTGGTTCTGGTTCTAGTAAACCTGTCATAAATTTCAGAAGCTCTAAGATAATTGACAAGAGAGGTTCTGACAATGAACTTGAGTGTGGCATTGTGGATGCTTTAGAGTTTGCTCGACAAGTTGCTCAGGAAGTTAATAGAGAAGTCAGCAGTTCTTCAGAAAAAATCTCAGAAGGCAGAATCAGGCAACCAGGCAGTCCAGATTCTGTAAGAAAAGAGGACGAGCTCACTCCTGTCCCACCCATGGAGGTTTTCTCCAGTAAATGCCATGCTACTGAGGCAGGTTCAATGGAGGAGCATGCGAGTATTTTAGACAATAATGAGGCTGAGCCAGAATGCAGATCTGATGTGGTGTCCTTTGAGATGATTGAAACAGCTCAAGATTCCGGGAGTAATTCAGAGAAACAACTCTGTGGCTTTGATCTCAACGAAGTTGGTGCTGATGATATGGATGTTTCTGTAAATACTACGTCTACCCCAATACCTGTCATCTCTGCTTCAAGGCCTGTGCCAACTCCTGGGTTGCCTGGGGCTCCTTTGCAGTTTGAGGGAACACTTGGATGGAAAGGATCAGCTGCCACCAGTGCCTTTCGACCTGCATCGCCTCGTAAAAATTGTGGTAGTGACAGGAATATTTCTGTTGATATGAACTTTGACACTTCCAAGCAGAAGCAGGATTGGCTTGATTTTGATCTAAATGTGGCTGAGGGTGAAGAAGGCAATGTAAAACCTATTGCTGAATCTTCAGGCAGGTCTTCTGGGCAATTTTCAGTTGAATTTAGTCCTAAAAAATCAAGCAGGCTTGAATTTGATTTGAATAGTACCGGTGATGATGGTGACGCCCAACCTTCAGATCACAGAATGGAGGGACAACTCTTTCTTGGAAGAATTGGCTATTGGAGCCCATCCCCTGCATCGTCATCATCATCAATGCAACCATCTGTTAGAAACATTGATTTGAATGACAGGCCATGCCTTCAAACTGATTTGGTAGACCAGGGGCCCAGTAAGTCTGCTCATCTTATCAATGCATTTGGTTGTTCTAAATCATCAGATGCTCCTGTTATCTCTCTTTTGGGCGCCAAGGTAGAAGTTGGTAAAAAAGAATGCGTTCCTCAAACGTTGTCTTTGCAGAATGGTAAGGCTATTGAACCTGCAATAGATCTCACAATGTCAAGAGCGGGTGGTGTTTTAGGGATGACCCCCACAATACCCTTCAATCATTCACCTGTTTGTGGGTATAATGGAGTGGCATCGGCATCAGTGGCACCCACCATGTCTTTTTCATCAGCCATGTACAGAGCAGGTGGCACAATTCCATACATGGTGGACTCAAGAGGAGCTCCAGTTGTCCCTCCAGTGGGTGGATCTTCATCAACTGTCCTTTCAACTTACTCTCAGCCACCAATCTTTATGAACATGACAGGTACACAACTTGGTCTGAATGGATTTGGACCTTCACGTCCTAACTTTGACCTGAACTCTGGCTTCATGATTGAGGGTGGGAATAGAGACACATTGGCCACAAGGCAATTTTTCTTTCCTGGTCAGCAGGGCAGGGCTGTGGAGGAGCAAGTAAGAACCATGCCGCAACCCTCAAGTTCAGGGGTTAGTGGGAAACGAAAGGAACCAGACAGTGGTTTGGAACCCTACCAATTTATCTACAGACATCCGCAACCTCCATGGAAGTAA 3021 0.4353 MTLEDFFTLTEMKDGLTAPSRVEELVSVMQKEKDGAVKNAADATRQWAAVASTIAATENKDCLDLFIQLDGLGFIDRWLKDAQNFGIDADESFVEESITAMLRAVEKLHIDSEKSMSSGIHITVSNLLGHHSARVQDRARTLFDSWKRVGNGDTESHDVDLAKVDNASDQNVSEEGQPSAVNEAGIDNDHASGLIGSEKSLLRSSDNLPVHSSDHVLHLSASAECIDIKERSANHVAGVPSSAQEVAPTHEGLPICTTSETNSAGTCIFPIPNQSSFEGQSDVVQLSDLAKMEKQEQNVNDPPEKLGAPEICSVSSKPELKPVSMVSCEEKAPVSMEEPALEQNVEHNEDDVSCNKLIISASMRTPASDRSGEDDVRNVTSITQVFKAAENDNDCCSKALQDTSVSDSNLGNTEVLDMSVSGTEYDTTSKEGKDHVYNDEDTSIGSGSSKPVINFRSSKIIDKRGSDNELECGIVDALEFARQVAQEVNREVSSSSEKISEGRIRQPGSPDSVRKEDELTPVPPMEVFSSKCHATEAGSMEEHASILDNNEAEPECRSDVVSFEMIETAQDSGSNSEKQLCGFDLNEVGADDMDVSVNTTSTPIPVISASRPVPTPGLPGAPLQFEGTLGWKGSAATSAFRPASPRKNCGSDRNISVDMNFDTSKQKQDWLDFDLNVAEGEEGNVKPIAESSGRSSGQFSVEFSPKKSSRLEFDLNSTGDDGDAQPSDHRMEGQLFLGRIGYWSPSPASSSSSMQPSVRNIDLNDRPCLQTDLVDQGPSKSAHLINAFGCSKSSDAPVISLLGAKVEVGKKECVPQTLSLQNGKAIEPAIDLTMSRAGGVLGMTPTIPFNHSPVCGYNGVASASVAPTMSFSSAMYRAGGTIPYMVDSRGAPVVPPVGGSSSTVLSTYSQPPIFMNMTGTQLGLNGFGPSRPNFDLNSGFMIEGGNRDTLATRQFFFPGQQGRAVEEQVRTMPQPSSSGVSGKRKEPDSGLEPYQFIYRHPQPPWK 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0217 1006 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 1006 - -
Aed9g0217 1006 MobiDBLite consensus disorder prediction 966 1006 - -
Aed9g0217 1006 MobiDBLite consensus disorder prediction 489 524 - -
Aed9g0217 1006 MobiDBLite consensus disorder prediction 689 705 - -
Aed9g0217 1006 MobiDBLite consensus disorder prediction 682 705 - -
Aed9g0217 1006 MobiDBLite consensus disorder prediction 166 192 - -
Aed9g0217 1006 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Aed9g0217 1006 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 156 IPR035441 -
Aed9g0217 1006 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1006 - -
Aed9g0217 1006 MobiDBLite consensus disorder prediction 423 450 - -
Aed9g0217 1006 Pfam TFIIS helical bundle-like domain 101 148 IPR017923 -
Aed9g0217 1006 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 153 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0217 Aed-Chr9 1541744 1544764 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aed9g0217 Med26 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0217 - - gmx:102664074 1670.21