Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0216 ATGACTCTTGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCTGTGATGCAAAAGGAGAAAGATGGTGTGGTTAAAAATGCTGCGGATGCGACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAACAAAGATTGCCTTGATCTTTTTATTCAATTAGATGGACTTGGCTTCATTGATAGATGGTTAAAGGATGCCCAAAATTTTGGGATTGATGCAGACGAAAGCTTCGTTGAAGAATCAATCACTGCAATGTTACGTGCAGTTGAAAAGCTGCATATAGACAGTGAGAAGTCAATGTCTTCAGGAATTTACATCACTGTAAGTAATCTTCTTGGCCATCATAGTGCTAGGGTTCAGGATAGAGCAAGAACATTGTTTGACAGCTGGAAGAGAGTTGGAAATGGTGATACTGAATCTCATGATGTGGATCTTGCTAAGGTTGATAATGCAAGTGACCAGAATGTCAGTGAGGAAGGCCAGCCATCTGCTTTGAATGATGCTGGAAATGATAATGATCATGCATCAGGACTAATTGGAAGTGAAAAATCTCTATTGAGAAGCTCAGATAATTTACCGGTACATAGTTCTGATAATGCACTCCACTTATCTGCCAGTGCGGAATGTATTGACATCAAAGAGGGATCAGCAAACCATGTTGCTGGTGTTCCATCTTCTGCTCAAGAAGTTGCTCCTGCTCATGAAGGATTGCCTATATGCACTACAGATGAGACCACTTCGGCTGGAACCGTTAACTTTCCCATTCCAAATCAAAGCAGTTTCGAAGGACAGTCAGATGTGGTACAATTAAGTGACTTAGCTAAAATGGAAAAGCAGGAGCAGAATGTTAATGACCCTCCAGAAAAATTAGGAGCACCCAAGATCTGTTCTGTGTCCTCTAAGCCGGAGCTTGAGCCTGTTTCCATGGTTTCTTGTGAAGCAAAAGCACCAGTATCTATGGAAGAACCAGCTTTAGAGCAAAATGTTGAACACAGTGAGGATGATGTTAGTTGTAATAAATTAACTATTTCTTCTAGTATGAGGACACCTGCATCTGATAGGAGTGGGGAAGATGATGTTAAAACTGTAACTAGCATTACACAAGTTTTCAAAGCTGCAGAAAATGATAATGATTGTTGTTCTAATGCATTGCAGGACATATCAGTCAGTGACAGTAACTTGAGAAATACTGAGGTGTTAGTCATGTCTGTCTCTGAAACAGAATATGTCACAGCATCAAAGGAAGGTAAGGGCCATGTTTATAATGATGAAGAAGATACATCAATTGGTTCTGGTTCTAGTAAACCTGGCATAGATTTCAGAAGCTCTAAGATAGTTGACAAGAGAGGTTCTGGCAATGAACTTGACTGTGGCATTGTGGATGCTTTAGAATTTGCTCTTCAAGTTGCTCAGGAACTTAATAGAGAAGTCAGCAGTTCTTCAGAAAAAATCTCAGAAGGCAGAATCAGGCAACCAAGCAGTCCAGATTCTGTAAGAAAAGAGGACGAGCTCAATCATGTCCCACCCAAGGAGGTTTCCTCCAGTCAATGCCATGCCACTGAGGCAGGTTCAATGGAGGAGCGTGCAAGTATTTTAGACAATGAGTCTGAGCCGGAGTGCAGACCTGATGTGGTGTCCTTTGAGGTGACTGAAACAGCTCAAGATTCAGGGGGTAATTCAGAGAAACGACAATGCGGCTTTGATCTCAACGAAGTTGGTGCTGATGATATGGATGTTTCTGTAAATACTACGTCTACCCCAATTCCTGTTGTTTCTGCTTCAAGGCCTGCACCATCTTCTGGGTTACCTGGGGCCCCTTTGCAGTTTGAGGGAACACATGGATGGAAAGGATCAGCTGCCACCAGTGCCTTTCGACCTGCATCGCCTCGTAAAAATTGTGAAAGTGACAGGAGTCTTTCTGTTCATATGAACTTTGATTCTTCCAAGCAGAGTCCGGATTGGCTTGATTTTGATCTAAATGTGGCTGAGGGTGAAGAAGGCAATGTAAAACCTATTGCTGAATCTTCTGGGCAACTGTCAGTTGAATTTAGTCCTAAAAAATCAAGCAGGCTTGAATTTGATTTGAATAGTACCGGTGATGATGGTGACACCCAACCTTCAGATCACAGAATGGAGGGACAACTCTTTCTTGGAAGAAATGGCTATTGGAGTCCATCCCCTGCATCGTCATCATCATCAATGCAGCCATCTGTTAGAAACATTGATTTGAATGACAGGCCATGCCTTCAAACTGATTTGGTAGACCATGGGCCCAGTAAGTCTGCTCATCTTATCAATGCATTTGGTTGTTCTAAATCATCAGATGCTCCTGTTATATCTCTTCTGGGTGCCAAGGTAGAAGTTGGTAAAAAAGAATGCTTTCCTCAAACGTTGTCTTTGCAGAATGGTAAAGCTATTGAAACTGCAATAGATCTTACAATGTCTAGAGCAGGTGGCATTTTAGGGATGGCCCCCACAGTACCCTGTTCACCTGTTCTTGGGTATAATGGAGTGGCATCGGCATCAGTGGCACCCACCATGTCTTTTTCATCAGCCATGTACAGATCAGGTGGCACAATTCCATACATGGTGGACTCAAGAGGAGCTCCAGTTGTCCTTCCAGAGGGTGGATCTTCATCAACTGTCCTTTCATCTTACTCTCAGCCACCAATCTTTATGAACATGACAGGTACACAACTTGGTCTGAATGGATTTGGACCTTCACGTCCTAATGTTGACCTGAACTCTGGCTTCATGATTGAGGGTGGGAATAGAGACACATTGGCCGCAAGGCAATTTTTCTTTCCTGGTCAGCAAGGCAGTGCTGTGGATGAGCAAGTAAGAACCATGCTGCAACCCTCAAGTTCGGGGGTTAGTGGGAAACGAAAGGAACCAGACAGTGGTTTGGAACCCTACCAATTTATCTACAAACATCCGCAACCTCCATGGAAGTAA 3003 0.4336 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKDGVVKNAADATRQWAAVASTIAATENKDCLDLFIQLDGLGFIDRWLKDAQNFGIDADESFVEESITAMLRAVEKLHIDSEKSMSSGIYITVSNLLGHHSARVQDRARTLFDSWKRVGNGDTESHDVDLAKVDNASDQNVSEEGQPSALNDAGNDNDHASGLIGSEKSLLRSSDNLPVHSSDNALHLSASAECIDIKEGSANHVAGVPSSAQEVAPAHEGLPICTTDETTSAGTVNFPIPNQSSFEGQSDVVQLSDLAKMEKQEQNVNDPPEKLGAPKICSVSSKPELEPVSMVSCEAKAPVSMEEPALEQNVEHSEDDVSCNKLTISSSMRTPASDRSGEDDVKTVTSITQVFKAAENDNDCCSNALQDISVSDSNLRNTEVLVMSVSETEYVTASKEGKGHVYNDEEDTSIGSGSSKPGIDFRSSKIVDKRGSGNELDCGIVDALEFALQVAQELNREVSSSSEKISEGRIRQPSSPDSVRKEDELNHVPPKEVSSSQCHATEAGSMEERASILDNESEPECRPDVVSFEVTETAQDSGGNSEKRQCGFDLNEVGADDMDVSVNTTSTPIPVVSASRPAPSSGLPGAPLQFEGTHGWKGSAATSAFRPASPRKNCESDRSLSVHMNFDSSKQSPDWLDFDLNVAEGEEGNVKPIAESSGQLSVEFSPKKSSRLEFDLNSTGDDGDTQPSDHRMEGQLFLGRNGYWSPSPASSSSSMQPSVRNIDLNDRPCLQTDLVDHGPSKSAHLINAFGCSKSSDAPVISLLGAKVEVGKKECFPQTLSLQNGKAIETAIDLTMSRAGGILGMAPTVPCSPVLGYNGVASASVAPTMSFSSAMYRSGGTIPYMVDSRGAPVVLPEGGSSSTVLSSYSQPPIFMNMTGTQLGLNGFGPSRPNVDLNSGFMIEGGNRDTLAARQFFFPGQQGSAVDEQVRTMLQPSSSGVSGKRKEPDSGLEPYQFIYKHPQPPWK 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0216 1000 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Aed9g0216 1000 MobiDBLite consensus disorder prediction 166 186 - -
Aed9g0216 1000 MobiDBLite consensus disorder prediction 491 508 - -
Aed9g0216 1000 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 153 IPR035441 -
Aed9g0216 1000 MobiDBLite consensus disorder prediction 967 1000 - -
Aed9g0216 1000 Pfam TFIIS helical bundle-like domain 101 148 IPR017923 -
Aed9g0216 1000 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 156 IPR035441 -
Aed9g0216 1000 MobiDBLite consensus disorder prediction 152 194 - -
Aed9g0216 1000 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1000 - -
Aed9g0216 1000 MobiDBLite consensus disorder prediction 432 456 - -
Aed9g0216 1000 MobiDBLite consensus disorder prediction 491 556 - -
Aed9g0216 1000 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 1000 - -
Aed9g0216 1000 MobiDBLite consensus disorder prediction 509 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0216 Aed-Chr9 1531450 1534452 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aed9g0216 Med26 7.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0216 - - gmx:102664074 1628.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0216 9 1531450 1534452 Aed9g0216 9 1531450 1534452 ECH