Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0196 ATGCTCGATTCGGTTCTTCTGGCGCTTTTCTTGCCGTGTCTTGGCATGAGCGGGGTTTTCATCGTCTACATGTGCCTTCTTTGGTACGCCACTACCCGCCACCACCAGCCCAGCAACGTCGACGGGCAACCGATGAAGCCCGTCGCTGAAAAGGGTCTATCCGCTTTGGAGTTGGAGAAGGTCCCAAGAATCACCGGCAAAGAACTCGTCTTGGGCACCGAATGCGCCGTCTGCCTCGACGAGATCGAGAGCGAGCAACCGGCCAGACTGGTCCCCGGTTGCAACCATGGCTTCCATGTCCATTGCGCTGACACCTGGCTCTCCAAGCACCCTCTTTGCCCCGTTTGCAGGACCAAGCTCGACCCGCAAATGTTCACTTCCCAAAGCCCCTGCTGA 396 0.5808 MLDSVLLALFLPCLGMSGVFIVYMCLLWYATTRHHQPSNVDGQPMKPVAEKGLSALELEKVPRITGKELVLGTECAVCLDEIESEQPARLVPGCNHGFHVHCADTWLSKHPLCPVCRTKLDPQMFTSQSPC 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0196 131 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Aed9g0196 131 SUPERFAMILY RING/U-box 74 124 - -
Aed9g0196 131 Pfam Ring finger domain 74 117 IPR001841 -
Aed9g0196 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Aed9g0196 131 SMART ring_2 75 116 IPR001841 -
Aed9g0196 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 123 IPR013083 -
Aed9g0196 131 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0196 Aed-Chr9 1399004 1399399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0196 1 131 C3H Transcription Factor Family AT5G42200 56.204 8.89e-49 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0196 K19037 - gmx:100776003 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0196 9 1399004 1399399 Aed9g0196 9 1399004 1399399 ECH