Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0184 ATGTCATGGGAGGCGAGAGCCCACGGCGACGAGGAGGGAAAGAACTACCCTGCTCCACTTGCTCCTCACGAAGACGTCGTGAATGACTCCACTCTCTTCTGGGATACTCTAAGGCGCTTTCACTTTGTTATGGGCACCAAATTTATGATACCTGTGATTGGAGGGAAGGAGCTGGATTTGTACGTTCTTTACGTGGAAGTTACGAGAAGAAGTGGCTACGAGAAGGTGGGGCTCCAGAAGAAATGGAGGGAAGTTGGTAGTGTTTTCAAGTTCTCAGCTACTACCACAAGCGCTTCTTTTGTACTAAGGAAACATTACTTCAGTCTTCTTTATCATTACGAACAAGTTCACTTCTTTAAAGCTCGGGGTCCTATCTACACTCCATCAACAGATGCATTTTCCGGCAACAGCCCTTCGTGGAGACCTGAGTTAGCTATTGTGGAATATTCGCCTAAGCCCATGAATAATAGTCCTGAATCCCGTGCTGAAGATAATTCATCATGTCTATCAGGAAATGGAACCATCGAGGGAAAATTTGACTGTGGTTATTTAGTATCCGTGAAGCTAGGTTCGGAGGTTCTAAGAGGGGTGCTTTACCATCCAGAGCAATTGGTTCCTCCTCCATCGATTCCACAACATCAACATGAGAGTGGCATCGTAGTACCATTCAACCGCACACCTAACCAACGTTCTGGTCGTAGGAGGAAAAACAAAAGAAGGTGGGACCCCAACTATCCAAAGCCGAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTGCACTCTTAAATCTCTTTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAACAGTCTTAGCCCAGAAGAAAGAATGGTTTATCAGAACATTGGCTTAAGAGATAAAGAAAGGTACAAGAGAGAATTGACGGAGTATAGAGAGAAGATGAAGCTTAGGCAGACCCCAGAAGTTGGACGTCCATAG 984 0.4502 MSWEARAHGDEEGKNYPAPLAPHEDVVNDSTLFWDTLRRFHFVMGTKFMIPVIGGKELDLYVLYVEVTRRSGYEKVGLQKKWREVGSVFKFSATTTSASFVLRKHYFSLLYHYEQVHFFKARGPIYTPSTDAFSGNSPSWRPELAIVEYSPKPMNNSPESRAEDNSSCLSGNGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLVPPPSIPQHQHESGIVVPFNRTPNQRSGRRRKNKRRWDPNYPKPNRSGYNFFFAEKHCTLKSLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELTEYREKMKLRQTPEVGRP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0184 327 Pfam HMG (high mobility group) box 246 313 IPR009071 -
Aed9g0184 327 MobiDBLite consensus disorder prediction 222 246 - -
Aed9g0184 327 Pfam ARID/BRIGHT DNA binding domain 32 114 IPR001606 GO:0003677
Aed9g0184 327 Gene3D High mobility group box domain 230 324 IPR036910 -
Aed9g0184 327 SMART bright_3 28 119 IPR001606 GO:0003677
Aed9g0184 327 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 321 - -
Aed9g0184 327 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 246 313 IPR009071 -
Aed9g0184 327 CDD HMGB-UBF_HMG-box 246 309 - -
Aed9g0184 327 SUPERFAMILY ARID-like 24 127 IPR036431 GO:0003677
Aed9g0184 327 SMART ARID_2 24 114 - -
Aed9g0184 327 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Aed9g0184 327 Gene3D - 22 123 IPR036431 GO:0003677
Aed9g0184 327 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
Aed9g0184 327 MobiDBLite consensus disorder prediction 1 21 - -
Aed9g0184 327 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 321 - -
Aed9g0184 327 SMART hmgende2 245 314 IPR009071 -
Aed9g0184 327 SUPERFAMILY HMG-box 243 316 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0184 Aed-Chr9 1328819 1330641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0184 4 320 ARID Transcription Factor Family AT1G76110 63.975 2.86e-137 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed9g0184 ARID 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0184 - - gmx:100784746 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0184 9 1328819 1330641 Aed9g0184 9 1328819 1330641 ECH