Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed9g0184 | ATGTCATGGGAGGCGAGAGCCCACGGCGACGAGGAGGGAAAGAACTACCCTGCTCCACTTGCTCCTCACGAAGACGTCGTGAATGACTCCACTCTCTTCTGGGATACTCTAAGGCGCTTTCACTTTGTTATGGGCACCAAATTTATGATACCTGTGATTGGAGGGAAGGAGCTGGATTTGTACGTTCTTTACGTGGAAGTTACGAGAAGAAGTGGCTACGAGAAGGTGGGGCTCCAGAAGAAATGGAGGGAAGTTGGTAGTGTTTTCAAGTTCTCAGCTACTACCACAAGCGCTTCTTTTGTACTAAGGAAACATTACTTCAGTCTTCTTTATCATTACGAACAAGTTCACTTCTTTAAAGCTCGGGGTCCTATCTACACTCCATCAACAGATGCATTTTCCGGCAACAGCCCTTCGTGGAGACCTGAGTTAGCTATTGTGGAATATTCGCCTAAGCCCATGAATAATAGTCCTGAATCCCGTGCTGAAGATAATTCATCATGTCTATCAGGAAATGGAACCATCGAGGGAAAATTTGACTGTGGTTATTTAGTATCCGTGAAGCTAGGTTCGGAGGTTCTAAGAGGGGTGCTTTACCATCCAGAGCAATTGGTTCCTCCTCCATCGATTCCACAACATCAACATGAGAGTGGCATCGTAGTACCATTCAACCGCACACCTAACCAACGTTCTGGTCGTAGGAGGAAAAACAAAAGAAGGTGGGACCCCAACTATCCAAAGCCGAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTGCACTCTTAAATCTCTTTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAACAGTCTTAGCCCAGAAGAAAGAATGGTTTATCAGAACATTGGCTTAAGAGATAAAGAAAGGTACAAGAGAGAATTGACGGAGTATAGAGAGAAGATGAAGCTTAGGCAGACCCCAGAAGTTGGACGTCCATAG | 984 | 0.4502 | MSWEARAHGDEEGKNYPAPLAPHEDVVNDSTLFWDTLRRFHFVMGTKFMIPVIGGKELDLYVLYVEVTRRSGYEKVGLQKKWREVGSVFKFSATTTSASFVLRKHYFSLLYHYEQVHFFKARGPIYTPSTDAFSGNSPSWRPELAIVEYSPKPMNNSPESRAEDNSSCLSGNGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLVPPPSIPQHQHESGIVVPFNRTPNQRSGRRRKNKRRWDPNYPKPNRSGYNFFFAEKHCTLKSLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELTEYREKMKLRQTPEVGRP | 327 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed9g0184 | 327 | Pfam | HMG (high mobility group) box | 246 | 313 | IPR009071 | - | |
Aed9g0184 | 327 | MobiDBLite | consensus disorder prediction | 222 | 246 | - | - | |
Aed9g0184 | 327 | Pfam | ARID/BRIGHT DNA binding domain | 32 | 114 | IPR001606 | GO:0003677 | |
Aed9g0184 | 327 | Gene3D | High mobility group box domain | 230 | 324 | IPR036910 | - | |
Aed9g0184 | 327 | SMART | bright_3 | 28 | 119 | IPR001606 | GO:0003677 | |
Aed9g0184 | 327 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 8 | 321 | - | - | |
Aed9g0184 | 327 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 246 | 313 | IPR009071 | - | |
Aed9g0184 | 327 | CDD | HMGB-UBF_HMG-box | 246 | 309 | - | - | |
Aed9g0184 | 327 | SUPERFAMILY | ARID-like | 24 | 127 | IPR036431 | GO:0003677 | |
Aed9g0184 | 327 | SMART | ARID_2 | 24 | 114 | - | - | |
Aed9g0184 | 327 | CDD | ARID_HMGB9-like | 29 | 114 | IPR045303 | GO:0003677 | |
Aed9g0184 | 327 | Gene3D | - | 22 | 123 | IPR036431 | GO:0003677 | |
Aed9g0184 | 327 | ProSiteProfiles | ARID domain profile. | 27 | 118 | IPR001606 | GO:0003677 | |
Aed9g0184 | 327 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Aed9g0184 | 327 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 8 | 321 | - | - | |
Aed9g0184 | 327 | SMART | hmgende2 | 245 | 314 | IPR009071 | - | |
Aed9g0184 | 327 | SUPERFAMILY | HMG-box | 243 | 316 | IPR036910 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed9g0184 | Aed-Chr9 | 1328819 | 1330641 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed9g0184 | 4 | 320 | ARID Transcription Factor Family | AT1G76110 | 63.975 | 2.86e-137 | 391 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Aed9g0184 | ARID | 1e-17 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed9g0184 | - | - | gmx:100784746 | 590.497 |