Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0159 ATGGGAGATGGTGGTGTGACATCATCATCGATGGAAGCTCTTCCTCCAGCACCTGATGGAACAACAATTTCAACTTCAATGGATTTTGATTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGCGGATGGATCTGACTTCTTGCTCCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCATGGCCTGCCTTGGAGACCAACCACAATGAATCATCCCATGATGCTGCTTCTGCTTTTGGGACTCAACATGAAAGCCACAACAACATGGTTAGTGTTGTTGCTCAGCAGTTTCAGTCCGAGACTCATTCAGTTGAAGCTGTCACAAGGTGGTGGTTAGCACCCTCTCCTAGTCCTGGACCTGGCCCTGGCCCTTCTATAATGGAGAAGCTAATAAGGGCACTCATGTGGATCAAAGCTTACAATAGGGACAGAGATATGCTTGTACAGATTTGGGTGCCGGTTCAGAAAGAGGGTAGGCCGATTCTCGCGGCTGATGATCTTCTGTTCTCGCTTGATTCCAAGTCTCTCAACCTTGCTAAGTACCGGGAAATCTCTTTGACATATAAGTTCTCTGCAGAGGAGAGTGACTCCAAGGGGTTGGCACGGGGATTGCCTGGTCGAGTATTTAGGGACAAGGTTCCTGAGTGGACACCTGATGTTAGATTCTTTAAGAGTGATGAGTATCCAAGAGTTGACCATGCTCAAGAGTATGATGTGAGTGGAACGTTGGCGGTTCCAATCTTTGAGCAAGGAAGCAAGACGTGCTTGGGGGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATGGCCATGAAATTGATAGTGTTTGCAAAGCACTTGAGAATACAGAAGTGTGTAGGAATGTTGTTAACTTGCAGGCTGTTGATCTTAGAAGCTCAAAACAATTAATTATTCTGGATTTGAAGGCATGCAACCGGTCCTATGAAACTGCACTACCTGAGATTCATGAGGTGTTGAGAACTGCTTGTGAAATGTACAAATTACCTTTAGCTCAAACTTGGCTCCCATGTGTCCAACAAGGCAAAGAGGGGTGCCGGCACTCTGAAGATAATTATCTACTCTGCATATCTCCTGTGGAGCATGCTTGCTATGTTGGTGAATCCTCTATTAAGTCTTTTCACGAGGCTTGCACCGAGCATCACTTGTTAAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTATGACAAACCAGCCATGCTTCTCAGATGACATAACTTCCTTAAGCAAGAAAGACTATCCACTGTCACATCACGCGAGGTTTTTTGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTATAATAGCTCAGATGACTTTGTTCTAGAGTTCTTCTTGCCTGTAGATTGCAATGACAGTGAAGAGCAGAGAAAGATGCTTACTTCATTGTCCAACATTATACAAAGGGTTTGTCGCAGCTTGCGCGTTATAAGAGACAAGGAATTGGAGGAAGCTAACTTGTCAGTTGATGAAGTGATAGCCCTTGCAGATAGTGGATTTGCTAGGAATGCAATTTGTTCGGAACCCCGACACAAAGGGATGGTTGCCTCATTGGATACTGAAGAAAAATCAAGTGAAGCAGTGGGTAGAAAATTCTCTGACCCAAGGCAGCAACAAGAAAGTCCTGTTTTAAAAGGAAACCTTGACTGTGTTAGGGAGTGTTCTACTTCTGTTGAGGGTAACATATCAAGTGTGGGAACAAATAAAACGGGAGAGAGAAGACGGGTCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAATATTGGTGTTTGTACTACAACTTTGAAGAGGATCTGCCGGCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCGGTTCAAGGTGCCTCTGGTGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCGGATCTAGCTTCTCCAAGTTTATCGGGAACCGGCTTATTCTCAGCTTTGAATCAAAGTGATAATCTAAAATTGACAAGCACACAGCCAGATGGTGACTCACTGAGCCCAGAAGGTGCATCAAAATCGCCCTCTTCGTTGTGCAGTCAGACTTCCATTTCAAGTCATTCCTGCTCCAACATGTCAGAGCTACAGCAGCATCACACAACTAACATTGCCACCGGTAACGAAGATCCCACCGTGGTTGGTGAAGATTCTGCTGATGTTGCGTTGAAGAGGATCAGAAGCGAGGCAGAGCTTAAAAGTCTGAGTGATGATAGAGCAAAGCTCTTGCCAAGATCACAAAGCCAGGAAACACTTGTTGAACACCCTAAAACTCAGTATCAGCTGCCCGTGTTGAAAACCGGTAGAAGCAAGGTGAATTCTCACAGAGTAAAAGTCACATTCGGAGATGATAAAACTCGGTTTCGGATGCCGAAGAATTGGGGCCATGAAGATCTTCTGCAAGAAATTGCTAGGAGATTTAATGTGAGTGACATGAGCCAATTTGATGTGAAATACTTGGATGATGACTGTGAGTGGGTACTACTCACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGAGTGGTACCATCAAACTTAGTCTACAACCTTCTAGTCATAGTATCAGAAGTTCTTTAGAGTTTAGATAA 2739 0.4429 MGDGGVTSSSMEALPPAPDGTTISTSMDFDYMGELFLDGCWLEASADGSDFLLQSPSFSNPLFDPSFSWPALETNHNESSHDAASAFGTQHESHNNMVSVVAQQFQSETHSVEAVTRWWLAPSPSPGPGPGPSIMEKLIRALMWIKAYNRDRDMLVQIWVPVQKEGRPILAADDLLFSLDSKSLNLAKYREISLTYKFSAEESDSKGLARGLPGRVFRDKVPEWTPDVRFFKSDEYPRVDHAQEYDVSGTLAVPIFEQGSKTCLGVIEVVMTTQQINYGHEIDSVCKALENTEVCRNVVNLQAVDLRSSKQLIILDLKACNRSYETALPEIHEVLRTACEMYKLPLAQTWLPCVQQGKEGCRHSEDNYLLCISPVEHACYVGESSIKSFHEACTEHHLLKGEGVAGGAFMTNQPCFSDDITSLSKKDYPLSHHARFFGLRAAVAIRLRSIYNSSDDFVLEFFLPVDCNDSEEQRKMLTSLSNIIQRVCRSLRVIRDKELEEANLSVDEVIALADSGFARNAICSEPRHKGMVASLDTEEKSSEAVGRKFSDPRQQQESPVLKGNLDCVRECSTSVEGNISSVGTNKTGERRRVKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPDLASPSLSGTGLFSALNQSDNLKLTSTQPDGDSLSPEGASKSPSSLCSQTSISSHSCSNMSELQQHHTTNIATGNEDPTVVGEDSADVALKRIRSEAELKSLSDDRAKLLPRSQSQETLVEHPKTQYQLPVLKTGRSKVNSHRVKVTFGDDKTRFRMPKNWGHEDLLQEIARRFNVSDMSQFDVKYLDDDCEWVLLTCDADLEECIDVCQSSESGTIKLSLQPSSHSIRSSLEFR 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0159 912 SUPERFAMILY CAD & PB1 domains 818 903 - -
Aed9g0159 912 MobiDBLite consensus disorder prediction 1 21 - -
Aed9g0159 912 Pfam PB1 domain 819 900 IPR000270 GO:0005515
Aed9g0159 912 PANTHER PROTEIN NLP4 24 908 - -
Aed9g0159 912 PANTHER PROTEIN NLP8 24 908 IPR045012 GO:0003700
Aed9g0159 912 SMART PB1_new 818 901 IPR000270 GO:0005515
Aed9g0159 912 CDD PB1_NLP 819 900 IPR034891 -
Aed9g0159 912 ProSiteProfiles RWP-RK domain profile. 583 666 IPR003035 -
Aed9g0159 912 ProSiteProfiles PB1 domain profile. 818 901 IPR000270 GO:0005515
Aed9g0159 912 Pfam RWP-RK domain 598 646 IPR003035 -
Aed9g0159 912 Gene3D - 815 901 - -
Aed9g0159 912 MobiDBLite consensus disorder prediction 701 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0159 Aed-Chr9 1147623 1152356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0159 27 903 NLP Transcription Factor Family AT1G20640 47.755 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aed9g0159 PB1 1.3e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0159 - - gmx:100785135 1515.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0159 9 1147623 1152356 Aed9g0159 9 1147623 1152356 ECH