Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0153 ATGAAAGGAGGCAAGTCTAAAACTGAATCCAAGAGAGCCGATCCCAAACTTGCTGTGAATAAGAAGGGTGCAGCCACCAAGGCTAGGAAGCCCGCCGGCAAGGGGAAGGCAGCAAAAGACCCTAACAAGCCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCATGGAGGAGTTCCGGAAGCAATTCAACAAGGAACATCCTGACAACAAGGCAGTGTCTGCTGACAAAGCACCTTATGCGGCGAAGTCCGAGAAGAGGAAAGTTGAGTATGAGAAGAACATGAGAGCCTATAACAAAAAACAGGCGGAAGGTCCTACTGCTGGTGATGAAGAAGAGTCCGAGAAGTCTGTATCTGAGGTGAATGATGAAGATGATGATGAGGATGGCAGTGCTGAGGAGGAGGATGACGATTAG 414 0.4879 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSADKAPYAAKSEKRKVEYEKNMRAYNKKQAEGPTAGDEEESEKSVSEVNDEDDDEDGSAEEEDDD 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0153 137 SUPERFAMILY HMG-box 35 102 IPR036910 -
Aed9g0153 137 MobiDBLite consensus disorder prediction 79 114 - -
Aed9g0153 137 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 136 IPR031061 -
Aed9g0153 137 SMART hmgende2 43 99 IPR009071 -
Aed9g0153 137 Coils Coil 80 100 - -
Aed9g0153 137 Gene3D High mobility group box domain 27 74 IPR036910 -
Aed9g0153 137 MobiDBLite consensus disorder prediction 1 18 - -
Aed9g0153 137 MobiDBLite consensus disorder prediction 1 51 - -
Aed9g0153 137 Pfam HMG (high mobility group) box 44 70 IPR009071 -
Aed9g0153 137 MobiDBLite consensus disorder prediction 115 137 - -
Aed9g0153 137 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 136 - -
Aed9g0153 137 MobiDBLite consensus disorder prediction 63 137 - -
Aed9g0153 137 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 98 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0153 Aed-Chr9 1080599 1082862 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aed9g0153 HMG_box 1e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0153 K25507 - gmx:547975 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0153 9 1080599 1082862 Aed9g0153 9 1080599 1082862 ECH