Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0138 ATGACTCGTCCCTTCAGATATTTAGGCGAGCGCAACTCGTCCACCGACTCCGCCGTCGTCGATTCCGACTTCGTCGTTATCCTCGCCGCCCTTCTCTGCGCTCTCATCTGCGTCCTCGGCCTCGTCGCCGTCGCCCGCTGCGGCTGTCTGCGCCGCCTCCGCCTCTCCTCCTCCGCCACTCCCCAGCCTCCTCCCGCTGCCGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACCGCCGAATCCGCGGTCAAGTTCGCCGATTGCGCGATCTGCCTCACGGAGTTCGCCGCCGGAGACGAAATTCTAGTGCTGCCTCAGTGCGGACATGGCTTCCACGTCACCTGCATCGACGCCTGGCTCAAATCGCATTCCTCGTGTCCAATCTGCCGTCAGATTCTGGTGGTTTCTCGCTGCGACAAGTGCGGCGGGATCCCAGCTCCGGCGAGCTCCAGCTCCAGCTCCGCGCCACCGCCGCCACCGCCGGAATCCGAGGCCAGATTCAAGGCAAGGGAGGACGACGTCAATAGGTTCTTGCCTTAG 564 0.6401 MTRPFRYLGERNSSTDSAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRLSSSATPQPPPAAANKGVKKKVLRSLPKLTATAESAVKFADCAICLTEFAAGDEILVLPQCGHGFHVTCIDAWLKSHSSCPICRQILVVSRCDKCGGIPAPASSSSSSAPPPPPPESEARFKAREDDVNRFLP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0138 187 SMART ring_2 96 137 IPR001841 -
Aed9g0138 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 142 IPR013083 -
Aed9g0138 187 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Aed9g0138 187 PANTHER RING-H2 FINGER PROTEIN ATL8 1 180 - -
Aed9g0138 187 MobiDBLite consensus disorder prediction 153 187 - -
Aed9g0138 187 MobiDBLite consensus disorder prediction 172 187 - -
Aed9g0138 187 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 180 - -
Aed9g0138 187 Pfam Ring finger domain 95 138 IPR001841 -
Aed9g0138 187 CDD RING-H2_PA-TM-RING 95 138 - -
Aed9g0138 187 SUPERFAMILY RING/U-box 78 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0138 Aed-Chr9 964842 965405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0138 5 187 C3H Transcription Factor Family AT1G20823 61.929 4.18e-67 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0138 - - gmx:100794614 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0138 9 964842 965405 Aed9g0138 9 964842 965405 ECH