Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0130 ATGGCATACCAAGCGATCCAGGGTCCCAGTTCTGGATCGAGTTCGAGTTCGGGGTTTCAGTTATTGAGTTCTCCGTTCGGAGACACCACCTACACCAAAGTCTTCGTCGGAGGATTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCACTTCGGCGAGATTCTCGAGGCTGTCGTCATCACGGATAAGAACACCGGAAGATCCAAGGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCGTGTGCTGATCCAACTCCTGTTATTGATGGCAGAAGGGCCAATTGTAATTTGGCTTCACTTGGTCGACCACGGCCCCCTCTGCCTTATGGACGGATAAGACCTGCCTCTCCTTATGTTGGAAGTCTGCAACCAGCTCGTGGTTCTTATGTTGGGAGTTATGGCTACCAGCAACCACTTTCCTACAGCTATCAACAAGGATTGGTTTACCCTCCTTATGGGTATACGACATATGGACCTGAGTACGTCTACCCACAGAATCTGTACAACCCATATATGGGGCAACAGTACCTTCAGATATATGGAGTGCCTGGGGCAGTGAATACAACTGTTTATCCTTATGGACAAGTGGGTCAGGCTATTCCTAGTGGTCATGGTTATTCCGCAATGCAGGGTTATGCAGTATCAGGTCATCAGATTGTACCATATGGTGGATCCAATGTTAATGCCATGACAACTTCACCTATGCCTGCTATTCAAGCTTCATATCCTAGTGGTATGGAATTGCTGCACCAGTTCCTGGCCAACCACAATTTATTGTTCCTGCTCCTCCTTCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGCTGGGTGAGGGGGCGAATAAGTTTGCAGCAGGACTAAGAGCAGCGGAACTGCTACTTGAGTGGCGGGCTTCCAATCTAGCCTTGCAAGTCATATATAGTCATGCTCACCAAGTTGTGTCTGAGTCGCTCCAGATGGTGAAGGAAACTGGAACGTGCGGGCTGCTTTTCCATTTGGACATTTACACTAGTGTATTTATACCTAATACTACCTGTACTCAGGAAGAGTGGCAGTAG 1089 0.4922 MAYQAIQGPSSGSSSSSGFQLLSSPFGDTTYTKVFVGGLAWETQSETMRRYFEHFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGSLQPARGSYVGSYGYQQPLSYSYQQGLVYPPYGYTTYGPEYVYPQNLYNPYMGQQYLQIYGVPGAVNTTVYPYGQVGQAIPSGHGYSAMQGYAVSGHQIVPYGGSNVNAMTTSPMPAIQASYPSGMELLHQFLANHNLLFLLLLLSLCKVAVLTKQLGEGANKFAAGLRAAELLLEWRASNLALQVIYSHAHQVVSESLQMVKETGTCGLLFHLDIYTSVFIPNTTCTQEEWQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0130 362 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 259 - -
Aed9g0130 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Aed9g0130 362 PANTHER BOULE-RELATED 1 259 IPR037366 GO:0003729
Aed9g0130 362 CDD RRM_RBM24_RBM38_like 32 107 - -
Aed9g0130 362 SMART rrm1_1 33 105 IPR000504 GO:0003723
Aed9g0130 362 SUPERFAMILY RNA-binding domain, RBD 31 119 IPR035979 GO:0003676
Aed9g0130 362 Gene3D - 4 116 IPR012677 -
Aed9g0130 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0130 Aed-Chr9 906411 912061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0130 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 8.51e-17 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0130 9 906411 912061 Aed9g0130 9 906411 912061 ECH