Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0113 ATGGGTTCTGGAGAAATAGAGTACCGATGCTTTGTTGGTGGGCTTGCATGGGCCACCGACAACGATGCTCTGGAGAAAGCCTTCTCTCAGTATGGAGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGCTTTGGATTTGTCACCTTCGCCTCAGAGCAGGCGCTGAGGGACGCAATCGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATCACTGTCAACGAGGCTCAGTCCCGTGGAAGAGGCGGAGGAGGAGGTTATGGAGGTGGTGGTGGTGGTTACGGAGGCGGTGGCGGTTACAGCCGCGGTGGAGGTGGAGGATATGGAGGAGGCCGCCGTGAAGGTGGCTATAATCGCAACGGTGGTGGCGGTGGATATGGAGGTGGTGGAGGCTATGGTGGCGGTGGAAGAGACCGTGGATATGGTGACGGTGGGGCCAGGTACTCGAGAGGTGGTGGTGCTTCCGACGGTGGAAGCTGGAGGAATTAG 513 0.5692 MGSGEIEYRCFVGGLAWATDNDALEKAFSQYGEIVESKVINDRETGRSRGFGFVTFASEQALRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGYGGGGGGYGGGGGYSRGGGGGYGGGRREGGYNRNGGGGGYGGGGGYGGGGRDRGYGDGGARYSRGGGASDGGSWRN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0113 170 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Aed9g0113 170 SMART rrm1_1 9 82 IPR000504 GO:0003723
Aed9g0113 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Aed9g0113 170 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 170 - -
Aed9g0113 170 MobiDBLite consensus disorder prediction 121 170 - -
Aed9g0113 170 Gene3D - 3 108 IPR012677 -
Aed9g0113 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Aed9g0113 170 PANTHER GEO13361P1-RELATED 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0113 Aed-Chr9 790339 791452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0113 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 36.709 1.76e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0113 - K13195 gmx:100777821 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0113 9 790339 791452 Aed9g0113 9 790339 791452 ECH