Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0087 ATGAAGATCCAGTGTGATGTGTGTGACAAAGTGGAAGCCTCCGTCTTCTGCTCAGCAGATGAAGCTGCTCTTTGCCACAGCTGTGATCGCACCATTCACCACGCAAACAAGCTTGCAACCAAACACCCTCGCTTCTCTCTCCACTACCCCACCTCCAAAGACTTCCCTCTTTGTGATATCTGCCAAGAGAGGCGTGCATATCTATTTTGCCAAGAAGACAGGGCATTGTTATGTAGGGAATGTGACTTTCCAATCCACAGAGCCAATGAGCATACCAAGAAGCATAACAGGTTTCTTCTCACGGGTGTCAAGCTCTCCTCCACTTCTTTGGATCCTCCTGCAGACGACTCTGTTTCCAATGAAAATGCAACTTCTACTTCTTGCAAGCTTGAAGACAACGTGGCTAGTGACACAGGTTCGGTTTCAACTAGCAGCATTTCTGAGTACTTGATTGAAACAATACCCGGTTACTGTTTTGAGGACCTTCTTGACGCTTCGTTTGCACCTAATGGTTCCTGTACGGACCAAGATCTTCAAGTTAGAACATGTTTGGTTTGA 558 0.4642 MKIQCDVCDKVEASVFCSADEAALCHSCDRTIHHANKLATKHPRFSLHYPTSKDFPLCDICQERRAYLFCQEDRALLCRECDFPIHRANEHTKKHNRFLLTGVKLSSTSLDPPADDSVSNENATSTSCKLEDNVASDTGSVSTSSISEYLIETIPGYCFEDLLDASFAPNGSCTDQDLQVRTCLV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0087 185 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed9g0087 185 CDD Bbox1_BBX-like 57 100 - -
Aed9g0087 185 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 125 - -
Aed9g0087 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 125 - -
Aed9g0087 185 PANTHER B-BOX ZINC FINGER PROTEIN 20 119 180 - -
Aed9g0087 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 119 180 - -
Aed9g0087 185 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aed9g0087 185 SMART bboxneu5 53 100 IPR000315 GO:0008270
Aed9g0087 185 CDD Bbox1_BBX-like 5 47 - -
Aed9g0087 185 Coils Coil 184 185 - -
Aed9g0087 185 Gene3D Classic Zinc Finger 1 100 - -
Aed9g0087 185 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Aed9g0087 185 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Aed9g0087 185 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0087 Aed-Chr9 630670 631392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0087 1 171 C2C2-CO-like Transcription Factor Family AT1G75540 51.232 2.14e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Aed9g0087 zf-B_box 3.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0087 - - gmx:100800981 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0087 9 630670 631392 Aed9g0087 9 630670 631392 ECH
Aed9g0087 9 630670 631392 Aed11g1234 11 17528833 17531821 ECH
Aed11g0072 11 570612 572079 Aed9g0087 9 630670 631392 PCT