Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0083 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGAGAGTTCATCGTCCAGCAAACGCTCTGCGAGGATATTTACTGCATGAACGCGAACACCGTCGCCGCCGCCGAAGATTTCTCCGTTGACGACCTATTTGACTTCTCTAACGGCTCTCTTCACTACGAACAACCGCAACAACAATACGGCGAAGAGAAAGAAAGCTTATCGGCTTCGTCACAGTCACAGGACCGCGGAGAAGACGATAGCAACTCCAATTCCACCGGCGCTTCCTATGATTCACTTTTTTCCACCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTCGTGGACGATTCTCTACCGGAGCTGTCACTTTTATACCCGGTTCGTTCGGAGGAAGCGAGCCGGTTTGTTGAACCGGAAGCCTTAGCGAAGAAAACGCCTCGTTTTCCGTGGGAAATGAAAATAACGACCAAGGCGAGAACCGTACGGAATAGGAAATCCAACACTCGCGTGTGGTCGCTGGGCAGCCCGTTGCTCTCGCTGCCGTCTTCGCCTTCTTCGTGTTCTTCTTCTGTGACGGAGCCGCCCGCTAAGAAGCAGAAGAAGCGGGCCGAGGCCCAGGCCTTTGGGGCCCAGATTCAGCGGCGGTGCAGTCACTGTCAGGTGCAGAAGACGCCGCAGTGGAGGACAGGCCCACTGGGCGCGAAAACCCTTTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTTTCGGAGTATAGACCGGCGTGTAGCCCCACCTTCTGCAGCGATATTCACTCCAATAGTCACCGCAAAGTGTTGGAGATGCGGAAGAGGAAAGGAGGGGAGGCTGGACCGGATACCGGCTTGGCCCAGCCCCAAATGGTTCCCACCTGCTGA 915 0.5541 MEVAVAKALKPSLRREFIVQQTLCEDIYCMNANTVAAAEDFSVDDLFDFSNGSLHYEQPQQQYGEEKESLSASSQSQDRGEDDSNSNSTGASYDSLFSTELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEASRFVEPEALAKKTPRFPWEMKITTKARTVRNRKSNTRVWSLGSPLLSLPSSPSSCSSSVTEPPAKKQKKRAEAQAFGAQIQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEMRKRKGGEAGPDTGLAQPQMVPTC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0083 304 MobiDBLite consensus disorder prediction 183 198 - -
Aed9g0083 304 MobiDBLite consensus disorder prediction 284 304 - -
Aed9g0083 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 275 - -
Aed9g0083 304 PANTHER GATA TRANSCRIPTION FACTOR 1 304 - -
Aed9g0083 304 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Aed9g0083 304 SMART GATA_3 214 268 IPR000679 GO:0006355|GO:0043565
Aed9g0083 304 Gene3D - 213 264 IPR013088 GO:0006355|GO:0008270
Aed9g0083 304 PANTHER GATA TRANSCRIPTION FACTOR 1 304 - -
Aed9g0083 304 MobiDBLite consensus disorder prediction 183 207 - -
Aed9g0083 304 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Aed9g0083 304 MobiDBLite consensus disorder prediction 59 92 - -
Aed9g0083 304 PIRSF Txn_fac_GATA_plant 16 302 IPR016679 GO:0003677|GO:0005634|GO:0045893
Aed9g0083 304 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Aed9g0083 304 CDD ZnF_GATA 219 276 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0083 Aed-Chr9 591984 593603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0083 40 285 C2C2-Gata Transcription Factor Family AT4G36240 43.137 2.51e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed9g0083 GATA 9.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0083 - - gmx:100808242 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0083 9 591984 593603 Aed9g0083 9 591984 593603 ECH
Aed5g0352 5 2462346 2464179 Aed9g0083 9 591984 593603 ECH