Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0079 ATGGACGTCGAAGAGGAAGCTCCACTCCACCAACAGTCTGATTCACAATGCCACACCGACCTGCAAGTTCTCCCCTACGCCCCCGCCGCCGCCGCAGACCTTCAAGACGCGGGAACCGCGACGACGGAGGCCGTGGCGGTTGAATCCGATGCGATAACCGAGATGGTGGCGGTGTCTGACGAGGGCGCCCAAACGCAAGTGATGGACGTAGCGATTGAGGAGAAGGGGAATGAAACAATTGACGTGGATAACGTGGCTTTGGAGACGGAGAAGGTGGAAGAGGAGCCGAATTTGACAATTGATGCCGAATACGACGAAATTGCGGACGGGAACGCAAATGGAGACGCTTTGATGGAAGAAGAAGAACAACAACAACTAGGAGATTTGAACTTAGGGGAGGAAGAAGAACAGCAAGAAGGAGAAGATGTAGAGGAAGAAGAACAGCAACGAGGACATGAGGAGGAAGAAGGAGAACAGCGATTAGGAGATGAGGAAGTAGAACAGCAACAAGGGGACGAGGAAGAAGAAGAAGAAGAACATCAACAAGGAGATGCGGAACAAGAAGAAGAACCACAACAAGGAGAGGGAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGAACAACAGCAAGGAGGGGAAGAAGAAGATGCTGATGGTGATGTTGGAATGGCAATGACAGAGGAGAAGAGTGCTGTTGTAAGTGGTGGGAAGAGGAAGCGTGGGACTGGGAAGAATGCTAAGGCTACAGGGAGAGCTGCATCCAGGAAAAAGATGGAGGAGGACGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGATGAGGCATTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGTAACTGTGAGAAGAATGCATCCTATATGTGCTATACATGTACATTTTCTTTGTGCAAGGGATGCATCAAAGACGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAATGTTAATTGAACAGAATGAGCAGGGAAACAATGTGGTAAAACTTCCCTCCCTCCCTCCTTTTCTTGTTGGACAAATAGATTTTAATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAACTATCTCTAACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGGGTCATTCTAAAGAGGAATCACCGGATGAACTTTTTGATGCCACTAATGATAGAGGATCAGATTCAGATAGCTCCTATGAGAATGTAGATTTGAGTCGTTCTAAAAGAAAAAATGCCAAGAAACGGGGAAAGTCCCGTTCCAAAGAAGGAAATTCACGTAGTGCAGTGACGATGCTTGGTTCCGATGGGCAATCTGGAGATGACAGCTCAGAGTGGGCCTCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACGAATCTGTTTTATCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGAAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTTAAAGAGGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATTAGTCATTTGGAAGGTGATGGCAATCCTAATTCATATACGAAAGCTGGCAAAGATAAAAGACGTAAAAATCGTAAGAAGGGCGATGAGAGAGGACTTCAAACTAATGTTGAAGATTATGCAGCCATTGATAACCATAATATTAATTTAATTTATCTAAGACGTAATTTGGTTGAAGATCTACTTGAAGATACAGAGAAGTTCCATGATAATGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAACAGGATTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATGGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGTCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGATATTCAGGACAAGGCATTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTGAGTCATCTCCGTGATAGAGCTAATGTTTGGACAAAATGGTTTGAAAATTATTCTCTTCCGTTCTATTTTGTGTTCATCCTTGACCCTTCTCTCACGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACTCCTGAAGAACGTCAACGCAGGTTGGAGGAAATTTCAGAAATACATGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAGGATGAAGATGAAATGGATGATAAAAGACAAGAAAACTACATGAGACCTAGAGGGTCTACTGCCTTTGGAAGGAGGGGGAGAGAGATTGTTTCTCCTAGAAGTGGTTCTATTTCAAGTGATTCTTGGAGTGGAACAAGGAATTATTCTAATGTGAATCAAGAACTCAGCAGAAATTTGTCTAATAAGGGATTTTCAATGAAAGGTGATAATGCTTCTAATGCTAATGAGGTGCTTAATGATACTCAACTGCACCGGGGAAGAGAGAGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAGCTATCTTCAACCTTGGAAAGTGGTGCTAAAAATACCCAACCATTGGTAACATCCGAGTCTTTTGCTTCTGCTGTATTAGAGGCTTCTGCACCACCATCTTCTGCCGGAATAACTCGTCCAGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAGCTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAAGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATAGTCTTAACAGATGCCTTGGCAGGGAATTTTTCTAAGGAACCATTGATGGTGGATAAAGCTCAATCGGTGCACGATTTACATTACCCATCCTCATACTCTAGGAAGTCTTCACAACAAGGTATAGAAGGTCAAGTTGGAGAAAGACTGGCATTAGATCAAAATGGTGGATCTTGGAATTCACATAGTACTCTGGGTTCTCCTGGACAAACCACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCTAATAGAACTTCTCCACTGGCTGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTGCTGATGCTGGTGTTATGAATGAAGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGGACTAGGGGGCAGGCTTTTGAAAATAAATGGTCACCGACACCTGTCCAGTTGCCTGGGTCTCTCATAGGAAATTCATTCCCAGGAAGTCACGGAGGTTTGCAGGCCTCTGTGGTAGTGCACCCAGAGCATGCTGTACAAAATGCTGAAAAAGGCTCAAGTTCACAACCTGGTGTTAGTTCAGCTTCTACAGATAATAACAAGTTACATCCTCAGGCAATAGCAGTGCCACCTGTTATGGCTTCAGGGGTTGACATCAAAATGGCAGGTGCAAATATGCAAAGCCAGGTTGTGAGTAGCCACAACCCTCATACTGAAGCTCAAGTGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACAACAGGCCTGGGGAGGTGCATCATCTCAAAGGATAGAACCAAATACTCCTGCTACTATGCTTGCCCAGCCAGCTTCCCATGGCCCCTGGGGTGATGCTTCATCTGTGCAGAACGTTGCCTCGTTTAACACTGGAAATCCAACTGCGAGTTTATCCACACCTGGATTTATGGGCATGCCTACACCTGAACCTTGGAGACCACCAGCTTCAAGTGGTCAGTCAAACATCACAGCTCCAGCTCCACCCAATATGCCTTGGAGCATGGGCATGCCAGGAAATCAGAATATGAACTGGGTTGGGGGTGTACCTGCCAACATGAACATGAACTGGATGCCTGCACAGGTGCCAGCACCTGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTACCTCCAGTGAATGCAGGTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATTCGAATGCAGGTTGGGTTGGTCCTGGTCAGGGGCTAGCACCTGGAAATGCCAATGCTGGTTGGGCTGCACCGGCCGGGAATCCGGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCAAGGGGATCGTGGTGTGCATGGCAGAGATTCTGGTTATGGTGGTAAATCATGGAACAGGCAGCCATCATTTGGCAGCGGAGGCAGAGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGGAGTCTGCAAGTATCATGAGAGTGGACGTTGCAGGAAGGGGGCTTCTTGTGATTTTCTACACACTTAG 4677 0.4518 MDVEEEAPLHQQSDSQCHTDLQVLPYAPAAAADLQDAGTATTEAVAVESDAITEMVAVSDEGAQTQVMDVAIEEKGNETIDVDNVALETEKVEEEPNLTIDAEYDEIADGNANGDALMEEEEQQQLGDLNLGEEEEQQEGEDVEEEEQQRGHEEEEGEQRLGDEEVEQQQGDEEEEEEEHQQGDAEQEEEPQQGEGEEEEEEEEEEEEEEEEEEDEEEEQQQGGEEEDADGDVGMAMTEEKSAVVSGGKRKRGTGKNAKATGRAASRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCEKNASYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNEQGNNVVKLPSLPPFLVGQIDFNDKNSWEYLFKDYYIDLKEKLSLTFDELTQAKNPWKGSDMGHSKEESPDELFDATNDRGSDSDSSYENVDLSRSKRKNAKKRGKSRSKEGNSRSAVTMLGSDGQSGDDSSEWASKELLEFVMHMRNGDESVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEISHLEGDGNPNSYTKAGKDKRRKNRKKGDERGLQTNVEDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDNVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRANVWTKWFENYSLPFYFVFILDPSLTLRECVEKLQLLKTPEERQRRLEEISEIHVDPNMDPSYESEEDEDEMDDKRQENYMRPRGSTAFGRRGREIVSPRSGSISSDSWSGTRNYSNVNQELSRNLSNKGFSMKGDNASNANEVLNDTQLHRGRERESQLSNSWERQKLSSTLESGAKNTQPLVTSESFASAVLEASAPPSSAGITRPAVKINETEKMWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLKIWRTTEKQDDSIVLTDALAGNFSKEPLMVDKAQSVHDLHYPSSYSRKSSQQGIEGQVGERLALDQNGGSWNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSPLAVEVPKNPANGWGADAGVMNEATNLPSPTPQTTPGGTRGQAFENKWSPTPVQLPGSLIGNSFPGSHGGLQASVVVHPEHAVQNAEKGSSSQPGVSSASTDNNKLHPQAIAVPPVMASGVDIKMAGANMQSQVVSSHNPHTEAQVWGSAGVPKPEQQAWGGASSQRIEPNTPATMLAQPASHGPWGDASSVQNVASFNTGNPTASLSTPGFMGMPTPEPWRPPASSGQSNITAPAPPNMPWSMGMPGNQNMNWVGGVPANMNMNWMPAQVPAPGNSNPGWAAPSQGLPPVNAGGWVGPGQGRSHVNSNAGWVGPGQGLAPGNANAGWAAPAGNPGMWGSEQSHNGDRFPNQGDRGVHGRDSGYGGKSWNRQPSFGSGGRGGSSRPPFGGQRGVCKYHESGRCRKGASCDFLHT 1558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0079 1558 MobiDBLite consensus disorder prediction 1481 1537 - -
Aed9g0079 1558 ProSiteProfiles Zinc finger C3H1-type profile. 1533 1558 IPR000571 GO:0046872
Aed9g0079 1558 Pfam Plus-3 domain 647 750 IPR004343 GO:0003677
Aed9g0079 1558 MobiDBLite consensus disorder prediction 1108 1130 - -
Aed9g0079 1558 SUPERFAMILY Plus3-like 643 771 IPR036128 GO:0003677
Aed9g0079 1558 SUPERFAMILY FYVE/PHD zinc finger 271 326 IPR011011 -
Aed9g0079 1558 ProSiteProfiles GYF domain profile. 1008 1062 IPR003169 GO:0005515
Aed9g0079 1558 MobiDBLite consensus disorder prediction 939 973 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 484 504 - -
Aed9g0079 1558 Pfam SWIB/MDM2 domain 508 581 IPR003121 -
Aed9g0079 1558 Gene3D - 1009 1068 IPR035445 -
Aed9g0079 1558 SUPERFAMILY SWIB/MDM2 domain 506 582 IPR036885 -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 891 907 - -
Aed9g0079 1558 ProSiteProfiles SWIB/MDM2 domain profile. 500 583 IPR003121 -
Aed9g0079 1558 SMART gyf_5 1009 1064 IPR003169 GO:0005515
Aed9g0079 1558 CDD PHD5_NSD 274 319 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 940 954 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 1 21 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 432 451 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 1227 1248 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 601 633 - -
Aed9g0079 1558 ProSitePatterns Zinc finger PHD-type signature. 275 335 IPR019786 -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 428 504 - -
Aed9g0079 1558 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 78 1558 - -
Aed9g0079 1558 SMART rtf1 642 752 IPR004343 GO:0003677
Aed9g0079 1558 CDD GYF 1008 1063 IPR003169 GO:0005515
Aed9g0079 1558 CDD Bbox1 320 346 - -
Aed9g0079 1558 Pfam GYF domain 1011 1051 IPR003169 GO:0005515
Aed9g0079 1558 ProSiteProfiles Plus3 domain profile. 642 775 IPR004343 GO:0003677
Aed9g0079 1558 SUPERFAMILY GYF domain 1001 1061 IPR035445 -
Aed9g0079 1558 ProSiteProfiles Zinc finger PHD-type profile. 272 338 IPR019787 -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 1107 1130 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 1229 1248 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 126 233 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 120 263 - -
Aed9g0079 1558 SMART PHD_3 274 320 IPR001965 -
Aed9g0079 1558 Coils Coil 192 227 - -
Aed9g0079 1558 Gene3D - 644 772 IPR036128 GO:0003677
Aed9g0079 1558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 366 IPR013083 -
Aed9g0079 1558 PANTHER UNCHARACTERIZED 78 1558 - -
Aed9g0079 1558 SMART swib_2 508 586 IPR019835 -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 955 973 - -
Aed9g0079 1558 CDD SWIB-MDM2_like 506 581 - -
Aed9g0079 1558 Gene3D SWIB/MDM2 domain 496 591 IPR036885 -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 846 907 - -
Aed9g0079 1558 MobiDBLite consensus disorder prediction 1279 1310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0079 Aed-Chr9 551016 560322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0079 272 343 PHD Transcription Factor Family AT5G36670 38.667 5.38e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aed9g0079 Plus-3 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0079 - - gmx:121174757 2305.02