Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0051 ATGAGTGAGAGTGAGAAGCAGAGGGTAACGGGGAAGGTGAAGTGGTTCAATGACCAAAAGGGTTTTGGCTTCATAACCACCGACGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCCGATCCGACGGCTTCCGCAGCCTTGCCCTCGGCGAGTCCGTCGAGTTCCATATTGACTCCGATCCCGAAGGCCGCACTAAGGCCGTCGACGTCACAGGCCCAGACGAAGCGCCCGTCCAAGGCACCCGCGGTGGCGGAGGAGGAGGGGGAAGAGGTGGTGGCTATGGAGGAGGAGGAGGAAGAGGTGGCTATGGTGGTGGAGGACGAGGCGGAAGAGGTGGCTATGGAGGCGGCGGCGGAGGATATGGTGGTGGTGGTGGCTATGGCGGCTATGGCGGAGGTGGTGGTTATGGTGGCGGAGGTGGATGCTATAAGTGTGGTGAGACTGGTCACATAGCTAGGGAATGCAGCCAAGTTAGATTTTAA 489 0.5971 MSESEKQRVTGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFHIDSDPEGRTKAVDVTGPDEAPVQGTRGGGGGGGRGGGYGGGGGRGGYGGGGRGGRGGYGGGGGGYGGGGGYGGYGGGGGYGGGGGCYKCGETGHIARECSQVRF 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0051 162 Gene3D - 140 161 - -
Aed9g0051 162 SMART csp_8 10 75 IPR011129 GO:0003676
Aed9g0051 162 PANTHER COLD SHOCK DOMAIN PROTEIN 2 113 160 - -
Aed9g0051 162 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 118 - -
Aed9g0051 162 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Aed9g0051 162 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Aed9g0051 162 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Aed9g0051 162 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Aed9g0051 162 MobiDBLite consensus disorder prediction 58 103 - -
Aed9g0051 162 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Aed9g0051 162 SUPERFAMILY Retrovirus zinc finger-like domains 136 159 IPR036875 GO:0003676|GO:0008270
Aed9g0051 162 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Aed9g0051 162 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Aed9g0051 162 ProSiteProfiles Zinc finger CCHC-type profile. 144 159 IPR001878 GO:0003676|GO:0008270
Aed9g0051 162 Pfam Zinc knuckle 143 159 IPR001878 GO:0003676|GO:0008270
Aed9g0051 162 Pfam 'Cold-shock' DNA-binding domain 9 74 IPR002059 GO:0003676
Aed9g0051 162 PANTHER COLD SHOCK PROTEIN 2 113 160 - -
Aed9g0051 162 PANTHER COLD SHOCK PROTEIN 2 4 118 - -
Aed9g0051 162 Gene3D - 1 85 IPR012340 -
Aed9g0051 162 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0051 Aed-Chr9 373146 375820 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Aed9g0051 CSD 1.2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0051 - - gmx:100820359 159.458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0051 9 373146 375820 Aed9g0051 9 373146 375820 ECH