Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0043 ATGGGAAGGTCTCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACTAAAGAAGAAGATGATCGACTCATAGCTTACATTAGAGCTCACGGCGAAGGTTGCTGGCGCTCTCTCCCTAAAGCCGCTGGCCTTCTCCGTTGCGGCAAGAGCTGTCGTCTCCGTTGGATCAACTATCTCCGCCCTGATCTCAAACGCGGCAATTTCTCCCAAGATGAAGACGAACTCATCATCAAACTCCATAGCCTCTTAGGCAACAAGTGGTCTCTAATAGCTGGAAGATTGCCTGGGAGAACAGACAATGAGATAAAGAATTACTGGAATACTCACATAAGAAGAAAGCTTCTGAGCAGAGGAATGGACCCTGCAACTCACAGGCCTCTCAACGATGAACAACAACCTCCTATGGAGTCGAAATCAGGTCCCACATCGGTGGAGCGCTGCCCTGACTTGAACCTTGAACTAACCATCAGTCCTCCTCAATTCAATTTGAAGAACAACCTTTGCTTTGCCTGCAGTTTGGGTACCTGTGCCTGTGGGTCCAACACTAGCACTTCCACTCCCACTGCCAACGCTACTACTGCAGCCTATGATTTCTTGGGCTTGAAATCCACCGTTTTGGATTACAGAACCTTGCAAATGAAATGA 651 0.4823 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSQDEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGMDPATHRPLNDEQQPPMESKSGPTSVERCPDLNLELTISPPQFNLKNNLCFACSLGTCACGSNTSTSTPTANATTAAYDFLGLKSTVLDYRTLQMK 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0043 216 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed9g0043 216 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed9g0043 216 CDD SANT 69 112 IPR001005 -
Aed9g0043 216 Gene3D - 68 141 - -
Aed9g0043 216 MobiDBLite consensus disorder prediction 120 146 - -
Aed9g0043 216 CDD SANT 16 61 IPR001005 -
Aed9g0043 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed9g0043 216 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Aed9g0043 216 SMART sant 66 114 IPR001005 -
Aed9g0043 216 SMART sant 13 63 IPR001005 -
Aed9g0043 216 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 134 - -
Aed9g0043 216 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 134 - -
Aed9g0043 216 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed9g0043 216 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed9g0043 216 Gene3D - 14 66 - -
Aed9g0043 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0043 Aed-Chr9 302093 303887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0043 1 216 MYB Transcription Factor Family AT2G16720 54.982 3.05e-97 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed9g0043 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0043 K09422 - gmx:778031 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0043 9 302093 303887 Aed9g0043 9 302093 303887 ECH