LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed9g0028	ATGGTGGTTGGGCAACTTGTTCCTTCGAACTTGCTCCTCAATGGTTCTGCTACTGCCAGAACATTCACGCACAGACACAGACTTGTATGTTTTTCTGGCAGTCACGCAACCAATAACGGCGATAAGGAATTTCCATTCTCAAGGTTCGAAAGACTCAAGACACAGAAAGTGAAGAAGACTCCTCCCCTGGTCTACAGAAGAAAGAACCAAAGACACGACGACGACGATGATAATGATGCAGTAGCCCCTAGACGCTCTCAGGGAGAAGGATGGGGGGATATGGATAATTATACGGCGGCGGCACAAAGACAAAGACAAAGCAACAAATCAGTGATTGACAGCAAGTTTTTCAGTCTCAAGTCCTTCAAAGAAATAGGGTGCAGTGAGTATATAATCCAGTCCCTCCATAAACTAATGTTGAGCCGGCCTTCCAATGTACAGGCCATGGCATTTGCAGCCGTTGTTCGCGGAAAGACATGTGTTATAGCTGACCAAAGTGGTTCTGGTAAGACTTTAGCTTATCTTGCACCAATCGTTCAGCGTCTCAGACAAGAAGAACTTGATGGATGTAGTCAATCATCTCCACAGGCTCCTAGACTCCTTGTACTCGCACCAACAGCCGAGTTAGCTTCTCAGGTCTTAAATAATTGTCGCTCCTTGTCCAAATCTGGGGTTCCATTCAAATCTATGCTTGCCACTGGTGGCTTTCGACACAAAACTCATTTGGAAAATTTACACCAGGGAGTTGATGTCTTAATAGCTACACCTGGCCGTTTTTTTGCTGTGTTGGATGAGGTAGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATCCTTGATCAATTCTTCACCGGTTGACACACAGTATTTATTTGTGACTGCAACCTTACCAAAAAATGTTTACACCAAATTGGTTGAAGTTTTTCCCGATTGTGAAATGATTATGGGGCCTGGTATGCACCGAATAAGTTCTCGCCTTCAAGAGGTCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAACTGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTCCCAAGAACTATTGTGTTCTGCAACAAAGTATTCCACATTCTTACCTTTGAGACAAAAGGAAATCTCATGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGGGAGAATTTACACGTTCACCATCAAAGGGCGTCTCCCAGTTTATGGTTTGCACCGACAGATATATATTTAAGTTGATTTTCACTGGTTTGATCTTTGATGATGATCTGTTAACTTGTGACAGAGCATCAAGGGGAATAGACTTCACAGGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTGAGGCGTGTTGGAAGAACAGCCAGAGGTGCCAAGGGAGTAGGCAAGGCATTTATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCACTCAAAATAATGGAAAGAAATCAGAAGGGTCACCCACTACATGATGTTCCTTCGGCTTATTAA	1557	0.4374	MVVGQLVPSNLLLNGSATARTFTHRHRLVCFSGSHATNNGDKEFPFSRFERLKTQKVKKTPPLVYRRKNQRHDDDDDNDAVAPRRSQGEGWGDMDNYTAAAQRQRQSNKSVIDSKFFSLKSFKEIGCSEYIIQSLHKLMLSRPSNVQAMAFAAVVRGKTCVIADQSGSGKTLAYLAPIVQRLRQEELDGCSQSSPQAPRLLVLAPTAELASQVLNNCRSLSKSGVPFKSMLATGGFRHKTHLENLHQGVDVLIATPGRFFAVLDEVDILFGDEDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEVSGEDGQEKTPDTAFLNKKTALLQLVEESPVPRTIVFCNKVFHILTFETKGNLMQVLPFHAAMTQESRLASMGEFTRSPSKGVSQFMVCTDRYIFKLIFTGLIFDDDLLTCDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLALKIMERNQKGHPLHDVPSAY	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed9g0028	518	SMART	ultradead3	139	328	IPR014001	-
	Aed9g0028	518	Pfam	DEAD/DEAH box helicase	145	303	IPR011545	GO:0003676\|GO:0005524
	Aed9g0028	518	Gene3D	-	346	514	IPR027417	-
	Aed9g0028	518	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	352	518	IPR001650	-
	Aed9g0028	518	MobiDBLite	consensus disorder prediction	66	83	-	-
	Aed9g0028	518	CDD	SF2_C_DEAD	349	490	-	-
	Aed9g0028	518	MobiDBLite	consensus disorder prediction	59	94	-	-
	Aed9g0028	518	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	151	317	IPR014001	-
	Aed9g0028	518	CDD	DEADc	131	303	-	-
	Aed9g0028	518	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	153	491	IPR027417	-
	Aed9g0028	518	SMART	helicmild6	374	480	IPR001650	-
	Aed9g0028	518	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	439	516	-	-
	Aed9g0028	518	Pfam	Helicase conserved C-terminal domain	349	479	IPR001650	-
	Aed9g0028	518	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	34	423	-	-
	Aed9g0028	518	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	34	423	-	-
	Aed9g0028	518	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	120	148	IPR014014	GO:0003724
	Aed9g0028	518	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	439	516	-	-
	Aed9g0028	518	Gene3D	-	87	317	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed9g0028	Aed-Chr9	188599	191285	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed9g0028	119	488	Eukaryotic Initiation Factors Gene Family	AT3G19760	23.291	1.43e-21	95.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed9g0028	K13179		-	gmx:100780849	704.901