Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0027 ATGGAGATTGATCTTGAGCTAACTATATGTGAGCATGAGATGCTTAATAGTGGATTTAGTGGAAACGATGTTACAGATACAGCATGTGATTTACACATTGAGGAGCAAAGCATCAATCCTTCGTCAATGACTGAACACTCTATTGAAGTTTTAAGTGAAAATGCTTTCTGTTGCCAGGATCAGGTGGATTTGAATTCCAATCAAGTGGATGCTGTTGATAAATTTCCCTTTAAAGAACCACAGAATGGCTTGGAATTTGAATCAAAGGAAGCTGCCTATTCTTTCTACAGAGAATATGCTCGTTCAGTGGGATTTGGCATCACAATAAAAGCCAGCCGACGCTCAAAAAAGTCTGGTAAATTTATTGATATTAAAATTGCTTGTTCCAGATTTGGAAGTAAGCGCAAGTCTGGTACTGCAGTTAATCCACGACCATGTTCAAAGACAGACTGTAAGGCTGGTATGCATATGAAGAAGAAGCAAGATGGTAACTGGATCATATACAATTTTGTAAAAGAGCACAATCATGAGATCTGTCCAGATGATTTTTCCAGGGGACGTAGCAAACAAACAAACAGTTTTGATATGGAAGCCAAAGCTGACTTTGAACCAAAACAACAGCAACTGGCATTAAAATCATTATCACCTTTTGAGAAGCAGCTATCACCAATTTATACAGATGCCATATTTAGAAAATTTCAGTTGGAAATATTGGGAATGATGTCTTGCCATCTCCAAAAGAAAACGGAAGAAAAGGCAAATGCCTTGGAAGAAATCTATAATCACTGTGCGAGTGCAAACTATTCTGCTAGAAGCACTTTAGAGTCCAACAAGTTGGCTCTTAATGGTTTTGATGTTGAAGAGAAAAATTGTGGCTGCCACAGGGCAAAGCCTACTAAGAAAAGGAAGTCATTTAATAAAAGGGAATGCTCTGATCCAGAAAGAGTCAATATCAAGATGCTGGACGATTTCCAAAAGAGGGAACAGAGAAATACAAGAGCACACAACTTTGATAATTGTTACATTTCTCAGCAGGACATCCAAACTGTGGACTTGGATTCCAGAGCTTCGACTCTTGATGTCTATTATGGGGCTCAACAGAATGTGCTTGGAGACGCGCAACTGAACTCAGTTTCTGTCATGCATGATGGCTACTATAGCAGTCAGCCAGCCATTCTAGGGATGGTAGGGCGCATGTACTTTCTCCTAGGCTCTTTTTCAGAGATGTTTATGGATCTCATATTTTGTTTCAATCTTCAGGGACAATTGCATTCCATGCCAAGCCGTGGTTCACATTATGAAATGCAGCACAGCATGCAAGGACCGCTTCAAGGACAGCTCACTTTCAGAACGCCAACAGTGCAAGGGTGTTTTGAACTTCAAGATTGTCTAGAAGCTATGGAACAACCTATTAGGGCCTCGCAGTTCCATGGCATTACATCAAAGCAACTAGATGTTGATAAATCACTTTCCTCATAG 1479 0.4003 MEIDLELTICEHEMLNSGFSGNDVTDTACDLHIEEQSINPSSMTEHSIEVLSENAFCCQDQVDLNSNQVDAVDKFPFKEPQNGLEFESKEAAYSFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRKSGTAVNPRPCSKTDCKAGMHMKKKQDGNWIIYNFVKEHNHEICPDDFSRGRSKQTNSFDMEAKADFEPKQQQLALKSLSPFEKQLSPIYTDAIFRKFQLEILGMMSCHLQKKTEEKANALEEIYNHCASANYSARSTLESNKLALNGFDVEEKNCGCHRAKPTKKRKSFNKRECSDPERVNIKMLDDFQKREQRNTRAHNFDNCYISQQDIQTVDLDSRASTLDVYYGAQQNVLGDAQLNSVSVMHDGYYSSQPAILGMVGRMYFLLGSFSEMFMDLIFCFNLQGQLHSMPSRGSHYEMQHSMQGPLQGQLTFRTPTVQGCFELQDCLEAMEQPIRASQFHGITSKQLDVDKSLSS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0027 492 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 191 254 IPR031052 GO:0006355
Aed9g0027 492 PANTHER PROTEIN FAR1-RELATED SEQUENCE 2 35 187 - -
Aed9g0027 492 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 187 IPR031052 GO:0006355
Aed9g0027 492 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 254 380 IPR031052 GO:0006355
Aed9g0027 492 Pfam FAR1 DNA-binding domain 94 179 IPR004330 -
Aed9g0027 492 PANTHER PROTEIN FAR1-RELATED SEQUENCE 2 254 380 - -
Aed9g0027 492 PANTHER PROTEIN FAR1-RELATED SEQUENCE 2 191 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0027 Aed-Chr9 183351 186571 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aed9g0027 FAR1 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0027 - - gmx:100802811 359.762