Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0018 ATGTTAATACAAACTTCTGTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGACTGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTGAAATGCAATAAGTACCCTCTTGACTGGTGTAGAAAAGCTAAACCAGTGGAAGAAGATAGAAGGAATGCTGATGATCCTTACAGCTCAAGCTGTCTAGTTAGCTTTGGTCAGCCATCAACTGCTAGCATAATGACAGAAAATACTACACCTAATATGGTATATAGGAGAAAGAAGCTCCGTAAAGACTCAAATTTGAAGCTAGTGCCAACTAATGTGCAGGCAAGTGCAAACTGCCCTTCAGTCATAAGTTCCGTTGCACATTTATCGTCAGCTGAGGATCAGCCAACTGGTTTTCAAGTTAAGCATGAAATTAAAGATCCTACCATGCCTTCAGTCGTATTTGATGGAGTAGCCAAAGATAGCACACATAAAAACTTAGGTATTAACAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAAATATGGAAACTGAAATGGATGAAACTGGTGAATGCTCCTCCTCCAGTATAATAGTCATGGATTGCACAAGGGAAGAAGTAACAGAAAAGGATTTCTGCATCAATATTTTAAGAAGCCATGAACTTCTTAAAGAAGATTCTCTTGTAAATAATGTGGCTTCTGGGGAAGATTTTGTCACCACTAGTGATAACTGTTGTTCCAGGTCATGCAAAATATGTGGTGATTTAGACAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCGTCTTGCTACAATCCACGTTTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAGAGACAGAAAATTCTCAAGGAGACAGTTATCAGATCACCAAGTATCCACAACAAATTGGGCAAATGTAGAACTGCCCCAGTTAAGGCTGAATTGAATCCCATACTGTTGATGTTGAGAGACACCAAGCCCTATACAACTGCTGTGCGTGTTGGCAAAGGTTTTCAAGCAGAAGTTCTTGACTGGTCAGGCCCAAAAAAAAGGACCTATTGCATGATGAATGACAATCAGGTTGAGATGAATTTTCTGGGACAAAGGACAATCACCATTTGCAACCAGGGAGAGAATACGAAAAATCCTATTAAACTTAGTTCCATCGGTAATTGGATTAAATGTCAAGCGGTTATAGATAGAGCCAATGGAACTATATGTGGAAAATGGCGCAGGGCTCCTCTTTTTGAAGTTCAAACTGATGACTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTACTGAAGCAACTGAAGTATATAGAAATGCTACGGCCTCGACTTGCTGCTAAACGGAAAAAATCAGATTGCACACATAATAATAGTGGTTGA 1476 0.3957 MLIQTSVLSSVEAGLCYVSDDGKDVLCDWMPSGETWQVCLKCNKYPLDWCRKAKPVEEDRRNADDPYSSSCLVSFGQPSTASIMTENTTPNMVYRRKKLRKDSNLKLVPTNVQASANCPSVISSVAHLSSAEDQPTGFQVKHEIKDPTMPSVVFDGVAKDSTHKNLGINSVNDSCSSSKPNMETEMDETGECSSSSIIVMDCTREEVTEKDFCINILRSHELLKEDSLVNNVASGEDFVTTSDNCCSRSCKICGDLDSSLNMLLCDHCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKETVIRSPSIHNKLGKCRTAPVKAELNPILLMLRDTKPYTTAVRVGKGFQAEVLDWSGPKKRTYCMMNDNQVEMNFLGQRTITICNQGENTKNPIKLSSIGNWIKCQAVIDRANGTICGKWRRAPLFEVQTDDWECFCAIHWDPSHADCAVPQELETDQVLKQLKYIEMLRPRLAAKRKKSDCTHNNSG 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0018 491 ProSitePatterns Zinc finger PHD-type signature. 250 294 IPR019786 -
Aed9g0018 491 SUPERFAMILY FYVE/PHD zinc finger 227 299 IPR011011 -
Aed9g0018 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 316 IPR013083 -
Aed9g0018 491 Gene3D - 403 468 - -
Aed9g0018 491 SMART PHD_3 249 295 IPR001965 -
Aed9g0018 491 Pfam PHD-finger 250 296 IPR019787 -
Aed9g0018 491 ProSiteProfiles Zinc finger CW-type profile. 399 459 IPR011124 GO:0008270
Aed9g0018 491 PANTHER HISTONE ACETYLTRANSFERASE 20 483 - -
Aed9g0018 491 ProSiteProfiles Zinc finger PHD-type profile. 247 297 IPR019787 -
Aed9g0018 491 PANTHER REMODELING AND SPACING FACTOR 1 20 483 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0018 250 295 C2H2 Transcription Factor Family AT3G01460 43.478 1.32e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed9g0018 PHD 2.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0018 - - gmx:100813057 879.782