Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2215 ATGCTGAAACCGAGGCCTCTAAGTCTAACGCACATATCCTCCTTTCTCGTAGCCATGCCCGCTACAACTGCAAGATTCGGATTGTTCTTCTGTCACTGTCATAGTAACAGAACACAGTACTTCCCAACGTTCTCTTCTTCCTTTCCGTTCCCGCGTCAGAGACTCCTCTCCAGCAGTTCAACCCCATATCCTCTCCAATATGAACTCATCATCAACCGTCCATCATACCCCGACGCTGCTCGCCGCCCACCAGCTGCTCGACCAATTCACTCCCCGGAACCCGACGGGCCCGAGCCCGAGCCCGAGCCCGAACTCAACAAGTCCCAGAGGAAGTACTACAACAAACGCAGGAAGCGGATGTACGGCTCCGACTCCGACGAAGACAGCGCGCGACGCGACGAGACGTTCGTGGAGTTGAAGCCCGATGTGATCGATTTTCCCACGCTGCACAAGAGGGAGGAAGAGTTGTTCTTTTACGACGCCTTCACCTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGTTGGAGAAAAAGTATTTTCCCGACCAGTGCCTCGACAAGGCGTTTCTCCAACCGGGACAGTCAAATCCAAATCGCAATGACAGTGGAAAGGGTAGGATGAAATCAAACAGTGATGACAAGTTGGTGTTTTTTGAGGAGGGAAAAGAGAAGTGTGAGACTGAGGAGGGTGGAAGTGGAAGTAGACAACTTAAGGAGAAGAAGGTCGAGGATTTCTTCAAGGGTTTGAACAAGGTTCCTAGTAATAACAAGGATGCTCAACTTGGAGTTGGAGACCCTTTTCTTTCGTCAAGGAGGACCGGTCTTCCTCCCCTCTGGGATACTCCTCATGGCACTGTGCTCTTGGTCAACAAACCAAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGTAAAGCAACGAAACTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGATATAAAGAGAAATGCTTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGGGAAAGCATTGAACTTTCACCCAGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCAGATGATGCGTGGGATTTTCAAGAGCTGGACGAGGCTATCACCAAAAATTATCTATAA 1521 0.4773 MLKPRPLSLTHISSFLVAMPATTARFGLFFCHCHSNRTQYFPTFSSSFPFPRQRLLSSSSTPYPLQYELIINRPSYPDAARRPPAARPIHSPEPDGPEPEPEPELNKSQRKYYNKRRKRMYGSDSDEDSARRDETFVELKPDVIDFPTLHKREEELFFYDAFTYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLQPGQSNPNRNDSGKGRMKSNSDDKLVFFEEGKEKCETEEGGSGSRQLKEKKVEDFFKGLNKVPSNNKDAQLGVGDPFLSSRRTGLPPLWDTPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELDEAITKNYL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2215 506 Pfam tRNA pseudouridylate synthase B C-terminal domain 459 502 IPR032819 -
Aed8g2215 506 MobiDBLite consensus disorder prediction 118 133 - -
Aed8g2215 506 SUPERFAMILY Pseudouridine synthase 288 501 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed8g2215 506 CDD PseudoU_synth_EcTruB 289 500 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed8g2215 506 MobiDBLite consensus disorder prediction 192 207 - -
Aed8g2215 506 MobiDBLite consensus disorder prediction 93 110 - -
Aed8g2215 506 Hamap tRNA pseudouridine synthase B [truB]. 286 506 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed8g2215 506 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 261 504 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed8g2215 506 TIGRFAM TruB: tRNA pseudouridine(55) synthase 288 497 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed8g2215 506 MobiDBLite consensus disorder prediction 192 213 - -
Aed8g2215 506 Pfam TruB family pseudouridylate synthase (N terminal domain) 308 458 IPR002501 GO:0006396
Aed8g2215 506 MobiDBLite consensus disorder prediction 76 133 - -
Aed8g2215 506 Gene3D Pseudouridine synthase 283 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2215 Aed-Chr8 26453350 26458890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2215 280 480 NAC Transcription Factor Family AT3G57150 33.333 3.21e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2215 K03177 - gmx:100793939 788.875