Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2204 ATGGAATCACCCGGTAACGAGCATGTGGTGGGTGGCGCAGAACCAAACGATGTCGTTGCGCCCTTTTCCCACAGAGAAGAACCCCACAATTCCCATCCCCTCACCGGTGATGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTGTCAAGCACTTTGGAAAATATGGTGAGATCACGGATTCGGTCATCATGAAGGACAGGAAAACTGGACAGCCTCGTGGATTTGGGTTTATAACGTATGCGGATCCCTCTGTGGTCGATAAAGTCATTGAGGATCCTCATGTCATCAATGGCAAACAAGTTGAGATTAAGCGGACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACACGCTACGGTGAAGTTAAAGATAACCAAATAATGCGGGACCACTCCACCAACCGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCGGTTGATGATCTTCTGTCCATGGGAAACAAAATTGACTTTGCTGGAGCTCAGGTGGAAATCAAGAAAGCTGAACCAAAGAAGCCAAACTCAGCACCTCCATCATCCAAGCGCTACAATGACTCTAGGTCTTCATACAGCAGTGGTGGATATGGAGATGCTTACGAAGGATTTGGTGGCAGCTTTGGAATGGGGGGTGGTTATAGGTCAACTGGTGCTTATGGTGGTGGTAGGGGCAGTGCTTATGGTGACTATGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGCAATGGGGCCGTATAGAGGAGATCCCTCCCTTGCGTATGCTGGTCGTTATGGAGGAAGCTTTAGCAGAGGCTATGATCTTGGTGGGTATGGCGGACCGAGTGAGAATTATGGAGCATATGGTGCAGGTGGGGGTTCTTCTGGTGCTGCTGGTGCCTACCAAAGTGGCTATGATGGAAACCTAGGAGGTGGATATGGAGGGGCTGGTGGAGGCCCCTTCTATGGGAGCAGTAGAGGAGGATACAGTGCTGGTGCTGGTGCCGGTGCTGGTCGATATCATCCATATGGAAGATAA 1131 0.4854 MESPGNEHVVGGAEPNDVVAPFSHREEPHNSHPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIDFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSSGGYGDAYEGFGGSFGMGGGYRSTGAYGGGRGSAYGDYGSEFGGYGGYAGAMGPYRGDPSLAYAGRYGGSFSRGYDLGGYGGPSENYGAYGAGGGSSGAAGAYQSGYDGNLGGGYGGAGGGPFYGSSRGGYSAGAGAGAGRYHPYGR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2204 376 Gene3D - 42 121 IPR012677 -
Aed8g2204 376 SUPERFAMILY RNA-binding domain, RBD 34 120 IPR035979 GO:0003676
Aed8g2204 376 Gene3D - 129 210 IPR012677 -
Aed8g2204 376 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 376 - -
Aed8g2204 376 SUPERFAMILY RNA-binding domain, RBD 120 218 IPR035979 GO:0003676
Aed8g2204 376 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 376 - -
Aed8g2204 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Aed8g2204 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 199 IPR000504 GO:0003723
Aed8g2204 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Aed8g2204 376 SMART rrm1_1 43 114 IPR000504 GO:0003723
Aed8g2204 376 SMART rrm1_1 131 204 IPR000504 GO:0003723
Aed8g2204 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Aed8g2204 376 MobiDBLite consensus disorder prediction 204 226 - -
Aed8g2204 376 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2204 Aed-Chr8 26348093 26351712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2204 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 9.24e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2204 K12741 - gmx:100793209 516.924