Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2192 ATGGCATCTTCTAGCTACTCGAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATATTCGGTCCATATTTTCCACCAGAAGAGCCTCAGAAGTTTTTCAATGTTCACAAGATATTCGGTGCAAGCAACGTGAGCAAGCTTCTGAACGAGGTGCAACCCCATCAGAGAGAGGATGCTGTGAACTCTCTGGCATATGAAGCCGAAGCAAGGATCAAAGATCCTGTGTATGGTTGCGTTGGTGCCATTTCGGTGCTCCAAAAACAAGTCCTTAGGCTCCAAAAGGAACTTGATGCCACTAACGCTGATTTGATCCGCTATAGTACTAATACTCATCAAGCTGATGATCATGCTTCTGCTTCTGCTTCTGCTTCCTCACTTGGTGTTGTTGATCACTCTCATCATGCTTTCTATTATCCTTATTCTAATTGGAACAATGATCCTGCTTGTGGAAATTATAATGGCTACCCCGGACCCGATATATAA 504 0.4405 MASSSYSNSPCAACKFLRRKCMPDCIFGPYFPPEEPQKFFNVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQVLRLQKELDATNADLIRYSTNTHQADDHASASASASSLGVVDHSHHAFYYPYSNWNNDPACGNYNGYPGPDI 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2192 167 Coils Coil 89 109 - -
Aed8g2192 167 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Aed8g2192 167 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Aed8g2192 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 154 - -
Aed8g2192 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2192 Aed-Chr8 26206978 26207481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2192 4 114 AS2 family AT3G27650 82.883 2.04e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed8g2192 LOB 1.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2192 - - gmx:100788656 262.307