Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2190 ATGGCCATGGACACTCCAAGCTCCCACTCTCTCTTCACCCACGTCTCTTCCAGAGAACTCTTCCGAGGTAATTCCTCTCTCTCTCTCTCAACATCACTTCACTTCACCTCACTTCGTTTTCTCACTCTCTCTGTTTGTTTCTCAGTTCGAAAACGACCTCGCATGGACGGATTCGTCTCCGGCTTCAACGAAACCGGTCTCCTCGCCATACAGCACCACGCCGAAGACACCATTCCCCTCTCTCTCTCCTTTTGCAAGACTTCAAAATTTGGACACATTCTCGCTGTTTCCGATGAGGACGGTTACGTCAGCTTGTTCGATACTCGCCGCAACTCCCCTGTTACTGCAAACTTTGGAGAAATCTCAGAGAAAGTGAAGATCTGCGATTGGGTTTCACATCAGAATGCTGTTTTTGATACCTGTTGGATTAAGGAAGGTACTCAGATTCTCACTGCTTCTGGTGATCAAACGATAAAATTATGGGATGTTCAAGAACAAAAGTGTCTCGGAGTGTTGACTGGGCACACGGGAAGTGTGAAATCTATGTGTTCTCATGCAACTAATTCTGATATTATTGTCTCTGGTTCTAGAGATGGATCCTTTCGTATCTGGGATTTGAGATGCAAGTCCACTGCTAAGAGTAGGCGTGGAGAAGTTAGCATATGTTCAATGGGGGGTGTCAAAGGAGCACATATTGCATCTCAAGCTAGACGAACTAGGAGAGGAAAGGCTGCTTCAATGAGCATTACATCTGTTCTTTGCCTCAAGGACCAGGTTTCTATAGCCACTGCTGGGGCGGTGGATAGTGTGTTGAAGTTTTGGGATACCAGAAATTTAAAAAGTCCTGTCACTCAGACATCTCCTAGTCCTCAGTCAACTGAAAAGCAAAGATTACATGGAATATCAAGCTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCAACCTCTTGCATGGATAATCGAATTTATTTGTATAACACTCTTCAACTTGAAAAAGGGCCTTCAAAATCTTTTTCCGGGTGCCGAATTGAATCATTTTTTGTAAAGGCTGCAATTAGCCCTGATGCATCGAACATAGTCAGTGGTTCTAGTGATGGAAATGGCTACGTTTGGAAGGTTGACAAACCTCTGGAAGATCCTACTATTTTGAAAAGTCATGATGGTGAAGTTACAGCAGTTGACTGGTGTAGTTCTGATATTGGCAAATTAGCAACTTGTTCTGATGATTTTACGGTTCGGACATGGAATAAAAACAGTTATGTCTCCAGAACACAATGTGCATCTGCCATCCGAAGAAGAATAATGGCAATTCCTAGTATAGAGTGCAAAATGCTTTTGAATAATGGAAAAAGGTACTCTAAGACAAATGAAGATGCTTTTAAACCCGATGACACACCACACCCGATTACGTCACCCACTCCAATCACACCACCTAAAATGAATACATCTGAAGGCCATACGAACCAACTTTCCACAGGATTAGATCTAAATGCACCATCCTCTGAAAAAACTCCAGAATCTACTTGGAAGAGCCCCTCATCTGTATTGAACCCGCCATCCTCCCTAAAAAGAACTATCCGAGACTACTTTTTAGCATCGTCAAGAACCTTGTAG 1614 0.4312 MAMDTPSSHSLFTHVSSRELFRGNSSLSLSTSLHFTSLRFLTLSVCFSVRKRPRMDGFVSGFNETGLLAIQHHAEDTIPLSLSFCKTSKFGHILAVSDEDGYVSLFDTRRNSPVTANFGEISEKVKICDWVSHQNAVFDTCWIKEGTQILTASGDQTIKLWDVQEQKCLGVLTGHTGSVKSMCSHATNSDIIVSGSRDGSFRIWDLRCKSTAKSRRGEVSICSMGGVKGAHIASQARRTRRGKAASMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSPVTQTSPSPQSTEKQRLHGISSLSQDESGLFLSTSCMDNRIYLYNTLQLEKGPSKSFSGCRIESFFVKAAISPDASNIVSGSSDGNGYVWKVDKPLEDPTILKSHDGEVTAVDWCSSDIGKLATCSDDFTVRTWNKNSYVSRTQCASAIRRRIMAIPSIECKMLLNNGKRYSKTNEDAFKPDDTPHPITSPTPITPPKMNTSEGHTNQLSTGLDLNAPSSEKTPESTWKSPSSVLNPPSSLKRTIRDYFLASSRTL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2190 537 MobiDBLite consensus disorder prediction 455 521 - -
Aed8g2190 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Aed8g2190 537 SUPERFAMILY WD40 repeat-like 83 420 IPR036322 GO:0005515
Aed8g2190 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 416 IPR001680 GO:0005515
Aed8g2190 537 MobiDBLite consensus disorder prediction 476 521 - -
Aed8g2190 537 Gene3D - 215 448 IPR015943 GO:0005515
Aed8g2190 537 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Aed8g2190 537 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Aed8g2190 537 PRINTS G protein beta WD-40 repeat signature 149 163 IPR020472 -
Aed8g2190 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 207 - -
Aed8g2190 537 SMART WD40_4 331 372 IPR001680 GO:0005515
Aed8g2190 537 SMART WD40_4 235 275 IPR001680 GO:0005515
Aed8g2190 537 SMART WD40_4 123 162 IPR001680 GO:0005515
Aed8g2190 537 SMART WD40_4 165 205 IPR001680 GO:0005515
Aed8g2190 537 SMART WD40_4 63 107 IPR001680 GO:0005515
Aed8g2190 537 SMART WD40_4 376 416 IPR001680 GO:0005515
Aed8g2190 537 SMART WD40_4 291 326 IPR001680 GO:0005515
Aed8g2190 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 164 - -
Aed8g2190 537 ProSitePatterns Trp-Asp (WD) repeats signature. 149 163 IPR019775 -
Aed8g2190 537 PANTHER BNAA06G31940D PROTEIN 46 532 - -
Aed8g2190 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 214 IPR001680 GO:0005515
Aed8g2190 537 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 46 532 - -
Aed8g2190 537 Pfam WD domain, G-beta repeat 382 416 IPR001680 GO:0005515
Aed8g2190 537 Pfam WD domain, G-beta repeat 132 162 IPR001680 GO:0005515
Aed8g2190 537 Pfam WD domain, G-beta repeat 167 205 IPR001680 GO:0005515
Aed8g2190 537 Gene3D - 7 214 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2190 133 367 U-box Gene Family AT1G04510 25.681 2.84e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2190 K11790 - gmx:100775857 889.412