Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2182 ATGGAGTTTGATCCACACTACACTCAAACCATGTTTCCTTTCTCTTCACAAAGCTCCATTCTAATTCCACCACCATCACCACAACCCATCAACATGTTTCACTATTTTCATCAAGACCACCACATCATGAATACCCAAAACCCTACCTTTGTGATGGAGGCTCATCACCACCCTATGACTGTGGTTGCACCAAACAACAACAACAACAAAATTGATCATCATGCTTTGCATGGCCACCACCATAACCATAAAGGAAAAGTCATTTGGGATTTCTCACAACAAATGATACTTCATTCATCTGATGATCAGGATGATCATGCTTCTTCTCTCTCTAATGACTATGGATTAGTTATGAGTTCTGAATATTATCACAGGGACTCTACTAATCAGAGGAGGGTGCAACAAAATATGAACATTATCAAAGGACATGTCGTTGTGGAATTGGTGAACCAAATTGGGGAAAAGAAATGGTCAGAGATTGCAAAGTTACTACATGGCAGGACTGGGAAGCAGTGTCGGGAAAGATGGCACAACCATCTCAAGCCAAACATTAAGGTTCCTTCCCTTTCTTTTGATTCATTTAGAATTTTTCATTTTATTTTTTTAAGGAGTCTGGAAGAAGACATGATTCTGATAAAAGCTCACCAGGAAGTTGGAAACAAGTGGTCGGAGATTGCGAAAAGGTTGCCGGGTAGGACTGAGAACAACATTAAGAACCACTGGAACAGCACCAAGCGCCGCCGAAACTGCAAGAAATCAATATCATCACACAATAATAACAAGAATAGTTATGAAGGGTTGTCACTGCTCCATGCATACATCAAAAGGGTCACTGCTACAAAAGTAGTAGTGTGCAAGAATAAGAATAAGAAGGTGTTCAGATGCAGTTGTGATCATCATGACCTTTCTCTTAATTTGTTGAACTATGATGATCATCATCATGTGTTCAATGGAAGCAGCAGCTATGCGCCAATGCAACTCAATAATAATAATAATAATAATAATTAA 1008 0.3909 MEFDPHYTQTMFPFSSQSSILIPPPSPQPINMFHYFHQDHHIMNTQNPTFVMEAHHHPMTVVAPNNNNNKIDHHALHGHHHNHKGKVIWDFSQQMILHSSDDQDDHASSLSNDYGLVMSSEYYHRDSTNQRRVQQNMNIIKGHVVVELVNQIGEKKWSEIAKLLHGRTGKQCRERWHNHLKPNIKVPSLSFDSFRIFHFIFLRSLEEDMILIKAHQEVGNKWSEIAKRLPGRTENNIKNHWNSTKRRRNCKKSISSHNNNKNSYEGLSLLHAYIKRVTATKVVVCKNKNKKVFRCSCDHHDLSLNLLNYDDHHHVFNGSSSYAPMQLNNNNNNNN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2182 335 PANTHER MYB PROTEIN-RELATED 57 265 - -
Aed8g2182 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 249 IPR017930 -
Aed8g2182 335 Gene3D - 143 186 - -
Aed8g2182 335 SMART sant 204 247 IPR001005 -
Aed8g2182 335 SMART sant 140 182 IPR001005 -
Aed8g2182 335 ProSiteProfiles Myb-like domain profile. 145 180 IPR001005 -
Aed8g2182 335 CDD SANT 204 245 IPR001005 -
Aed8g2182 335 SUPERFAMILY Homeodomain-like 145 246 IPR009057 -
Aed8g2182 335 PANTHER MYB DOMAIN PROTEIN 100-RELATED 57 265 - -
Aed8g2182 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 184 IPR017930 -
Aed8g2182 335 ProSiteProfiles Myb-like domain profile. 204 245 IPR001005 -
Aed8g2182 335 Gene3D - 204 266 - -
Aed8g2182 335 CDD SANT 146 180 IPR001005 -
Aed8g2182 335 Pfam Myb-like DNA-binding domain 146 180 IPR001005 -
Aed8g2182 335 Pfam Myb-like DNA-binding domain 204 243 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2182 Aed-Chr8 26122396 26123742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2182 144 284 MYB Transcription Factor Family AT4G18770 49.645 5.60e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed8g2182 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2182 K09422 - gmx:102668949 251.906