Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2179 ATGGAATTTGATGAGAGCTTGTGGGATCCAGAATACCTTTCAAGCCTTTCTCTGAGAAACTCATATACCATTCAAACACCACCCCCATTATCACCATTGCCACCACTGCCACCCATCATATTTGAATTTAATCCCAACAACACTTTTCCCCATTTTGAAAATGACATGATGAATGTGCCTACATACAACCCTACCTTTGTGACAAATGGTCCTTATTCCAACCCCATCACCACCCCCTTCTATGGGGCACCAATCCCTTCTTTAGGTGTTGAGTCTTCCCTAGGAGCCTTTGTTAACATTCACCATGATCACCACCCTATGATGTTAGCACCAACCAACAACACTGCTTTGCATGGCCACCACAATATTGGCCAAGCCATATTGGATTTTTCACAGCGAGCATTAAATTATTCAAATCAATTTGAACCTTCACCTCTTTCTTTCCCTAATGGGCATGGATTGGTGATGAGTAGTGACTATCAACTTGATGCTGATCAGATGGTAAATGTGAAAAATGATACCAAAGCTGATGATAGTATAATCAAAGGAAGCTGGACTCCTGAGGAGGATTGGTATATATGTGACACTTATGCTCTTGAGAAATTGGTGAAAGAATTTGGGTCCACCAAATGGACCCAAATTGGAAATCGCATGCACAGGAGGATGGGAAAACAGTGTCGGGATAGATGGCTCAACCATCTCAGTCCAGACGTCAAGAAGGCGCCCTGGACCAATATTGAAGACATGATACTGATCAACGCCCACAAAAGGATGGGAAACAGATGGTCCCTAATGGCCAAGAAATTGTTGCCTGGTAGGACGGAGAACAGCATAAAAAACCATTGGAACTCCGCCAAGCGCCGCCAGAACCGTGAGAATCCCAAGAACAATGACATCACTTATGATGAGACAGTGCTCCATGACTATGTCAAAAGTGTCACTGCAAAATGCAAATCAAACAAGCCAGCTGCTGCAAATTAA 981 0.4343 MEFDESLWDPEYLSSLSLRNSYTIQTPPPLSPLPPLPPIIFEFNPNNTFPHFENDMMNVPTYNPTFVTNGPYSNPITTPFYGAPIPSLGVESSLGAFVNIHHDHHPMMLAPTNNTALHGHHNIGQAILDFSQRALNYSNQFEPSPLSFPNGHGLVMSSDYQLDADQMVNVKNDTKADDSIIKGSWTPEEDWYICDTYALEKLVKEFGSTKWTQIGNRMHRRMGKQCRDRWLNHLSPDVKKAPWTNIEDMILINAHKRMGNRWSLMAKKLLPGRTENSIKNHWNSAKRRQNRENPKNNDITYDETVLHDYVKSVTAKCKSNKPAAAN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2179 326 ProSiteProfiles Myb-like domain profile. 235 286 IPR001005 -
Aed8g2179 326 Pfam Myb-like DNA-binding domain 185 248 - -
Aed8g2179 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 238 IPR017930 -
Aed8g2179 326 MobiDBLite consensus disorder prediction 280 300 - -
Aed8g2179 326 PANTHER MYB PROTEIN-RELATED 165 315 - -
Aed8g2179 326 CDD SANT 242 283 IPR001005 -
Aed8g2179 326 Gene3D - 181 239 - -
Aed8g2179 326 SMART sant 181 236 IPR001005 -
Aed8g2179 326 SMART sant 239 288 IPR001005 -
Aed8g2179 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 290 IPR017930 -
Aed8g2179 326 MobiDBLite consensus disorder prediction 279 300 - -
Aed8g2179 326 Gene3D - 241 304 - -
Aed8g2179 326 ProSiteProfiles Myb-like domain profile. 177 234 IPR001005 -
Aed8g2179 326 PANTHER MYB DOMAIN PROTEIN 100-RELATED 165 315 - -
Aed8g2179 326 CDD SANT 184 234 IPR001005 -
Aed8g2179 326 SUPERFAMILY Homeodomain-like 180 282 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2179 Aed-Chr8 26109258 26111056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2179 171 313 MYB Transcription Factor Family AT5G58850 47.134 8.27e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed8g2179 Myb_DNA-bind_6 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2179 K09422 - gsj:114405432 254.218