Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2178 ATGGCTGCCACAGCAACTGCAATGGGTCCGCGGTATGCACCAGCAGACCCGACACTTCCTAAACCATGGCGGGGTCTTGTGGATGGTAAGACTGGGTATCTTTACTTTTGGAATCCCGAGACTAATGTCACCCAGTATGAGAGGCCATCCTCAATCTCAGCTGCCCAGCCAAAGTCTTCTTCAGTGCCCAGCTCTTCTGTCCAGGTTCAACAATCGTCTCAAGGGCTGCAGCGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGTTTCTAATGAAGCTGGATTGCGGAATAATCAGAGTTCCAAAGGTGGAAGTTATAGTTCTCATAATGTTTCAAATGGAACAAGTGTTGCTAGCAATGTTAATTCTTCTGCCAGAGGCCATGGAGACAATGTGCCTCCGCCCCTTGCATCATTTGGGTCAACTGGCTTTCCATCTGAGCTTCTGAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCTCAGGGAAAACCTTGGGGTATTTAATTCCAGCATTTATGCACCTGAAGCGCTCTGGTAATAACTCCAAATTGGGCCCCACTGCATTGGTGCTTTCACCAACTAGGGAGTTGGCCACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCTAGAATTTCATGTACATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAACTGAGAGACATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCAACAGGTTTCTTACCTGGTGCTAGATGAAGCAGACAGGATGCTGGATATGGGTTTTGAACCTCAGATTAGGAAAATTGTGAATGAGGTGCCTAATCGCAGGCAAACTCTAATGTTTACTGCAACATGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTAGTCAAGCCTGTCCAGGTGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCCATTACCCAGCATGTTGAAGTATTGCCACCAATGGAGAAACAAAGACGCCTGGAACATATTTTACGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACAAAGAAAATGTGTGATCAACTTGCTCGTAATCTGACACGTCAGTTTGGAGCTGCTGCTATTCATGGGGATAAGTCCCAGGCTGAGAGGGATCATGTGTTGAGTCAGTTTCGAACTGGGAAGTCTCCTGTGCTAGTGGCCACAGATGTTGCTGCTAGGGGATTGGATATCAAGGACATTAGGGTTGTTGTCAATTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGAAGAGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGCTGATCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAACCAGAAGGTACCTCCAGAGCTTCGTGATATGTCATCACGGAGTGGTGGTGGGATGGGCAGATCCAGACGATGGGGTTCTGGTGGACGAGGTGGACGTGGTGATTCTGGATATGGTGGAAGGAATGACTCTGGATATGGTGGAAGGGGTAACGATGCAGGATATGGTGGAAGAGGCAGTGATTTAAGTTATGGAGGGAGGGGGACTACTGCTTCTTCTGGTAGAGGTGGAGGCCGTGGGTTTGACTATGACTCCCAGAGGAATGATAGGGGTCGGAGTCCAGACAAGGGATCTAGTTGGAGTGACCGCTTCAAAAGCGTCAACCGTGAACGCAGTCGTAGTCCTGACAGGGCTTCACTACCTCAACATTCCCAAGGCAGCAGCTTTCACAAGGCAATGATGGAACGTGGTGGTGGATGGGATAGTGATCGCAATAAGAGCTTTACCCGGGACCGAAGCCGCAGTTCTAGCCCTCATAGACAGGAGAAGGCCCCTGCAGTTCGTGAACGTTCCCCGGTTTACAGTTTTCATCGATCAGTAATGGGACAAGGTCAATCATCTCCTTCATCTCAAAGGCAGCATGGACGGAGTCCTCACCGAAACTCACCCCCCTCCCAGGGTGATGGAAGATATGGTGGACCTCCTCATTCATCCTACAATGGAGAAGTGGAGGAAGGGATGATTCCAGAGGAAGAAGGAATGATAGGTCAAGATGATCCTCCCATATATTAA 2259 0.4754 MAATATAMGPRYAPADPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSISAAQPKSSSVPSSSVQVQQSSQGLQRGRSPDFSDRYDRNGSGVSNEAGLRNNQSSKGGSYSSHNVSNGTSVASNVNSSARGHGDNVPPPLASFGSTGFPSELLREVQNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPAFMHLKRSGNNSKLGPTALVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLQQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPPMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLSQFRTGKSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFADQDAKYASDLIKVLEGANQKVPPELRDMSSRSGGGMGRSRRWGSGGRGGRGDSGYGGRNDSGYGGRGNDAGYGGRGSDLSYGGRGTTASSGRGGGRGFDYDSQRNDRGRSPDKGSSWSDRFKSVNRERSRSPDRASLPQHSQGSSFHKAMMERGGGWDSDRNKSFTRDRSRSSSPHRQEKAPAVRERSPVYSFHRSVMGQGQSSPSSQRQHGRSPHRNSPPSQGDGRYGGPPHSSYNGEVEEGMIPEEEGMIGQDDPPIY 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2178 752 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 134 616 - -
Aed8g2178 752 MobiDBLite consensus disorder prediction 48 145 - -
Aed8g2178 752 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 294 302 IPR000629 -
Aed8g2178 752 Gene3D - 121 352 IPR027417 -
Aed8g2178 752 SMART ww_5 18 51 IPR001202 GO:0005515
Aed8g2178 752 MobiDBLite consensus disorder prediction 1 23 - -
Aed8g2178 752 Gene3D - 14 65 - -
Aed8g2178 752 Gene3D - 353 524 IPR027417 -
Aed8g2178 752 MobiDBLite consensus disorder prediction 90 133 - -
Aed8g2178 752 MobiDBLite consensus disorder prediction 48 80 - -
Aed8g2178 752 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 134 616 - -
Aed8g2178 752 MobiDBLite consensus disorder prediction 645 676 - -
Aed8g2178 752 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Aed8g2178 752 Pfam DEAD/DEAH box helicase 167 337 IPR011545 GO:0003676|GO:0005524
Aed8g2178 752 ProSiteProfiles WW/rsp5/WWP domain profile. 17 51 IPR001202 GO:0005515
Aed8g2178 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 499 IPR027417 -
Aed8g2178 752 SMART ultradead3 162 365 IPR014001 -
Aed8g2178 752 MobiDBLite consensus disorder prediction 513 752 - -
Aed8g2178 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 348 IPR014001 -
Aed8g2178 752 CDD SF2_C_DEAD 362 491 - -
Aed8g2178 752 Pfam Helicase conserved C-terminal domain 374 482 IPR001650 -
Aed8g2178 752 MobiDBLite consensus disorder prediction 687 713 - -
Aed8g2178 752 MobiDBLite consensus disorder prediction 591 626 - -
Aed8g2178 752 CDD WW 20 49 IPR001202 GO:0005515
Aed8g2178 752 ProSitePatterns WW/rsp5/WWP domain signature. 23 49 IPR001202 GO:0005515
Aed8g2178 752 SMART helicmild6 402 482 IPR001650 -
Aed8g2178 752 SUPERFAMILY WW domain 9 50 IPR036020 GO:0005515
Aed8g2178 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 521 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2178 Aed-Chr8 26093920 26099425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2178 141 520 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 2.49e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2178 K12823 - gmx:100816455 1202.58