Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2172 ATGCATCCATCTATCACTTTTATTCTCAGCCAAGGAACATGGTCTCATCAATCAAACACGTGGTCGAAAATTGCAAAGCATCTTCCGGGAAGAACAGACAATGAGATTAAGAATTTCTGGAGAACTAGGATCCAGAAGCACATTAATAAGCAAGCTCATGAGACTTCTTCACAACAACATGGTAATAATTATTCTTCAGAGAACAATAACATTAATGAACATCAAGCAAGCACTAGCAGCACTAGCAAAGTTTCCACCATGGCACATCATCATCCAAATGAGAGTACTTTCTCTCCACCCTCATACCAAGGGACTAATTTTCAGCCATTTCTTCCAACTCATCATCAATTCCCTACAATCACTGATCATCAATCAAGTTGCTGTACCAATGAAAACATCATCAACAACAACAGCAACAGCAACAACAACAACTATTGGAGCATGGAGGATATCTGGTCCTCTATGCATTTACTCAATGGAGATTAA 486 0.3889 MHPSITFILSQGTWSHQSNTWSKIAKHLPGRTDNEIKNFWRTRIQKHINKQAHETSSQQHGNNYSSENNNINEHQASTSSTSKVSTMAHHHPNESTFSPPSYQGTNFQPFLPTHHQFPTITDHQSSCCTNENIINNNSNSNNNNYWSMEDIWSSMHLLNGD 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2172 161 Pfam Myb-like DNA-binding domain 17 42 IPR001005 -
Aed8g2172 161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 48 IPR017930 -
Aed8g2172 161 MobiDBLite consensus disorder prediction 50 124 - -
Aed8g2172 161 MobiDBLite consensus disorder prediction 51 124 - -
Aed8g2172 161 Gene3D - 8 91 - -
Aed8g2172 161 ProSiteProfiles Myb-like domain profile. 12 44 IPR001005 -
Aed8g2172 161 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 17 157 - -
Aed8g2172 161 SUPERFAMILY Homeodomain-like 14 52 IPR009057 -
Aed8g2172 161 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 157 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed8g2172 161 CDD SANT 16 42 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2172 Aed-Chr8 26053117 26053874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2172 18 160 MYB Transcription Factor Family AT3G27810 45.455 7.23e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed8g2172 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2172 K09422 - gmx:100305972 173.711