LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g2167	ATGGAGCATATTTCGGAGAAAAGATTTCCTCTTAATGCAGAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGTGTTAGTGCCTCTGTATTCAGGGCTCTCTGCGTTCCACTCAATGAAATAGTTGCCATCAAGGTTCTTGATCTAGAGAAGTGCAATAATGATTTGGATGGCATTCGAAGAGAGGTACAGACCATGAGCTTGATTGATCATCCGAATGTTTTACAGGCACATTGCTCTTTTACTGCAGGACACAATCTATGGGTTGTGATGCCATACATGGCAGGGGGGTCTTGCCTTCATATAATGAAATCTTCCTATCCTGAGGGTTTTGAAGAGCCTGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTCTATCTCCATGCTCATGGTCACATACATAGAGATGTTAAGGCTGGGAATATTCTGCTTGATACTAATGGTGCAGTCAAACTAGCTGACTTTGGAGTGTCAGCATGTATGTTTGATACTGGAGATAGGCAACGTTCAAGAAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTCATGCAGCAACTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACGGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAATATCCACCTATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGTCTTTCAAAGAGTTGGTTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCAAGTTCAGAGAAGCTTTTAAAACACCACTTCTTTAAACAAGCACGTGCCAGTAAATATCTAGCTCGCACAATTCTAGAAGGCCTTGCTCCTTTAGGAGATCGTTTTAGAATGCTGAAGGCTAAAGAGGCGGACTTATTGGTGCAGAACAAGGCTCTCTATGAGGATAAGGATCAATTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAGGATTTGAAAAGTCAAGCTGCTCTTATTCAAGATGATGACATACCTAATGCAGAAGAGCCACAAAGAGATAAGAAGCAAAATAACAGATTGGATGACTTCAAAGTTTCTGCAGAGGGGCCATCAGCTGGAGCAGCTAATCATTCAGATGATGTGCCCACGCAGGTCAAGGAGGATTCACATCACATCCTATTTCAGGAGGGATTCAACAATCTACAGGATTTGGAGAGTTCACTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGATGTTTTGATATGTGTGAGGATGACGTTAATAACAGCAGTCCAAGAGATTTGGATCATGATTATGGAAGAATTAACAATGAAAGTTCTGGGCCAAGTACTTCGGTACAACAAAATGCCAGTCAGCAAAAAAAGTTTCTGAGTGGTTCTTTGCTACCTGATAATTTTCTTTTTCCCAAAAAGGTTGTTACTGATGGGGACAGGGATTATCTACAAACAAAATATTCTTCAGAGAGGAATCACAGTGGTCCATTGCAATATCGGCAGAAGAGAGACACCAACAACCCTCCATTGGTTGATGACACATCAGATGGAGCATTTTTCCAGTGTAGGGGGCGGTTTAAGGTCACAGATATCAGTCCAATGGGTCCTTCAAACAGCACATCTGGCCAACTTGTTAGTCCTACCAGTCCACCAAATCAGAATTTCATGGCTTCTTCTATTCTTCCATCACTGCAGTGCATCTTGCGACAGAACGGTTTGCAAAGGGCACCATCCGCAACAACTAAGGAGCGAGAGCTTCATTTTCGGGTGATTCAACTCCAACAGAGCATTGGAAGCCTTGTTGAGGAATTGCAAAGACAAAAGATGAAAAATGTTCAGTTGGAAAAACAGTTGAGCAGTATGGCTAACAAAGTGGAAAAGTGA	1944	0.412	MEHISEKRFPLNAEDYKLYEEVGEGVSASVFRALCVPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLQAHCSFTAGHNLWVVMPYMAGGSCLHIMKSSYPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDTNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPSSEKLLKHHFFKQARASKYLARTILEGLAPLGDRFRMLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNAEEPQRDKKQNNRLDDFKVSAEGPSAGAANHSDDVPTQVKEDSHHILFQEGFNNLQDLESSLASFPSKPLQALKGCFDMCEDDVNNSSPRDLDHDYGRINNESSGPSTSVQQNASQQKKFLSGSLLPDNFLFPKKVVTDGDRDYLQTKYSSERNHSGPLQYRQKRDTNNPPLVDDTSDGAFFQCRGRFKVTDISPMGPSNSTSGQLVSPTSPPNQNFMASSILPSLQCILRQNGLQRAPSATTKERELHFRVIQLQQSIGSLVEELQRQKMKNVQLEKQLSSMANKVEK	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g2167	647	MobiDBLite	consensus disorder prediction	550	570	-	-
	Aed8g2167	647	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524
	Aed8g2167	647	SUPERFAMILY	Protein kinase-like (PK-like)	13	278	IPR011009	-
	Aed8g2167	647	Coils	Coil	617	644	-	-
	Aed8g2167	647	SMART	serkin_6	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed8g2167	647	ProSiteProfiles	Protein kinase domain profile.	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed8g2167	647	MobiDBLite	consensus disorder prediction	552	570	-	-
	Aed8g2167	647	Gene3D	Transferase(Phosphotransferase) domain 1	97	315	-	-
	Aed8g2167	647	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	1	644	-	-
	Aed8g2167	647	MobiDBLite	consensus disorder prediction	505	536	-	-
	Aed8g2167	647	Gene3D	Phosphorylase Kinase; domain 1	5	92	-	-
	Aed8g2167	647	CDD	STKc_OSR1_SPAK	14	277	-	-
	Aed8g2167	647	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	1	644	-	-
	Aed8g2167	647	MobiDBLite	consensus disorder prediction	445	476	-	-
	Aed8g2167	647	MobiDBLite	consensus disorder prediction	357	374	-	-
	Aed8g2167	647	MobiDBLite	consensus disorder prediction	508	532	-	-
	Aed8g2167	647	MobiDBLite	consensus disorder prediction	458	476	-	-
	Aed8g2167	647	MobiDBLite	consensus disorder prediction	354	396	-	-
	Aed8g2167	647	Pfam	Protein kinase domain	16	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g2167	Aed-Chr8	25990363	26002514	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g2167	1	644	MAP Kinase Kinase Kinase Kinase	AT5G14720	62.734	0.0	859

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Aed8g2167		Pkinase	9.1e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g2167	K08835		-	gmx:100784402	1174.07