Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2149 ATGGGTCGTGCAAGAATAACTTTGAAACACATCTCAAATGAGAGATCTCGCAAGAGCACTTTCATAAAGAGAAGTAAGTGCCTAATCAGGAAAATCAATGAATTTTCAACCTTGTGTGGAGTTGCAGCTTGTTTGATTGTGTATAGTGATGATGATGATGGCAATAATATTAAACCAGTAACTTGGCCTGAAGACCCCAAAGTGTTACACTCCATCATTGAGAAATATGAGCATCAAAAGAATGAGAAACCTCCAAAGATCTTTGGTGTTCAAGACTTTGTTGAGAATAGGAAGGGCATGCTTGAAGCTGAGATTTCCAAAATCCACAAGCAAATCTCCAGCATCAAGTATCCATCTTGGAATCCGTGTATGGCGAGCATGGAAGAGGAGCAACTGAGGGCCTTCATTGCTCAGGTGGATGCTAAGATTATGGCTTGTGCTCATATATTGAAAAACAAGCATCAAAGTGAAGATGATGATCTTGTGGGTCGGACCAATCAACCTGTTGAATCTATCTTCAAAAGTATTTGTGTTCAATCTCAGAATGAACAACTAGGAGGAGGAGCTATCTTGCCACCACCATTGGATGGATTTCAAACAGATTGA 606 0.401 MGRARITLKHISNERSRKSTFIKRSKCLIRKINEFSTLCGVAACLIVYSDDDDGNNIKPVTWPEDPKVLHSIIEKYEHQKNEKPPKIFGVQDFVENRKGMLEAEISKIHKQISSIKYPSWNPCMASMEEEQLRAFIAQVDAKIMACAHILKNKHQSEDDDLVGRTNQPVESIFKSICVQSQNEQLGGGAILPPPLDGFQTD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2149 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Aed8g2149 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed8g2149 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed8g2149 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed8g2149 201 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Aed8g2149 201 PANTHER PROTEIN, PUTATIVE-RELATED 3 151 - -
Aed8g2149 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed8g2149 201 CDD MADS_SRF_like 2 86 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aed8g2149 201 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Aed8g2149 201 PANTHER MADS BOX PROTEIN 3 151 - -
Aed8g2149 201 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2149 Aed-Chr8 25819084 25820134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2149 1 143 Type I MADS-box Gene Family AT5G55690 33.793 1.87e-22 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed8g2149 SRF-TF 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2149 - - gmx:106797420 218.779