Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2143 ATGGAGTCTGGCCGGATTTTCTTTGATTCCTCTGCTTCACGCGGGAACAACATGCTCTTCCTCGGCAACACTGAACTTGCTTTTCGAGTTTGGCTTTTTAACTTTCATACAGTCCATCTGTTGGAGAAGAACTTTGAGGAAGAGAACAAACTGGAGCCTGATAGGAAGACCCAGTTGGCTAAGAAGCTGGGATTGCAGCCAAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAGCAACTCGAAAGGGATTATGATGTTCTCAAGTCTTCATACGATACCCTACTTTCATCCTATGATTCAATTATGAAAGAGAATGAAAAACTCAAATCTGAGGTGGTATCCTTAAATGAAAAGCTTCAAGTTGAAGCTAAAGTGGTGCCTGAAGAGGAGGAACAATTATTATGTGACAAGAAAGTTGATGCACTTCCATTAGATGATGATGATGATGATGAAATGGCTCCAATTTTCAGCACAACAAGGGTGGAGGACCACCTGAGTAGTGGGAGTGTTGGAAGTGCAGTGGTGGACGAGGGTAGTCCACAGGTGGTTGTTGACAGTGTTGTTGATTCATACTTTCCAGCTGACAACTATGGTGGTGGATGCGTGGGCCCCACTGCCGTCGAAAGGGTGGTGGTTCAATCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACTTGGATGTGTTTTTGGTTTCTGAAACTGAGCACCAAAACCATCATAATCATGAGGAAGGAGAGGCATTGGCTTGGTGGAATAATATGTATTATGTTGGATAA 798 0.4511 MESGRIFFDSSASRGNNMLFLGNTELAFRVWLFNFHTVHLLEKNFEEENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSEVVSLNEKLQVEAKVVPEEEEQLLCDKKVDALPLDDDDDDEMAPIFSTTRVEDHLSSGSVGSAVVDEGSPQVVVDSVVDSYFPADNYGGGCVGPTAVERVVVQSEEEDGSDDGRSYLDVFLVSETEHQNHHNHEEGEALAWWNNMYYVG 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2143 265 PRINTS Lambda-repressor HTH signature 64 80 IPR000047 GO:0003677
Aed8g2143 265 PRINTS Lambda-repressor HTH signature 55 64 IPR000047 GO:0003677
Aed8g2143 265 CDD homeodomain 36 85 IPR001356 GO:0003677
Aed8g2143 265 ProSiteProfiles 'Homeobox' domain profile. 33 84 IPR001356 GO:0003677
Aed8g2143 265 Coils Coil 104 124 - -
Aed8g2143 265 Pfam Homeobox associated leucine zipper 84 126 IPR003106 GO:0006355|GO:0043565
Aed8g2143 265 Gene3D - 36 82 - -
Aed8g2143 265 SUPERFAMILY Homeodomain-like 20 86 IPR009057 -
Aed8g2143 265 Pfam Homeodomain 31 82 IPR001356 GO:0003677
Aed8g2143 265 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Aed8g2143 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 37 235 IPR045224 GO:0003700
Aed8g2143 265 SMART HOX_1 27 88 IPR001356 GO:0003677
Aed8g2143 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 37 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2143 Aed-Chr8 25742731 25746075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2143 1 258 Homeobox Transcription Factor Family AT3G01470 44.444 5.86e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed8g2143 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2143 K09338 - gmx:100797836 352.058