Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2142 ATGATCATGGAACACTCCGATTCCACCGGCGGTGACCGCAACCTCAACGCGCCGCCGCTACCGCCGCAGAACCACAACAGCCAAGACTCACGTTCCGGCCTCGGAATCGACCTAAACGAGATCCCGTCGCCTTCCTCTTCATTCCCCGAAACCCTACCGGACTCCGTCGCCGTCGACTTCGTCCGAGCTTATCACGATAATCCAGTGCCGCCGCCAGGAGGACCCGCCATCCTTCCCCGAGGTGGTTCCTCTCCCTGTGCCGCCTGCGCCAAGCCCTCCTCCGCCGCCGGAGGCCACCATCAGGTCGTCGTGTGCGACGGCTGCGAGCGCGGCTTCCACCTCGCCTGCGCCGGAATTCGCGGTGGAGGCCGGCAGGCGGCGAGCCTCGACGAGTGGGTCTGCGGCGAGTGTGTCTCCGCCGGAGTGAAGAGTAAGCGGTGGCCTTTGGGAGTGAAACAGCTTCTCGATATCAATGCTCCACCGCCGAGCGATGCCGAAGGCGACGGCGGCGACGAGGAGGTGCAAGATTTGAGAAAGCACACTCTGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAGTGACGAATTCAAACTTCAACAATGGGAATGCTATTGGCTTCCAAAAGGCATCTGGAGTTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATACTCAGTCAATTACTAGAAGCTTTGAGGAGGCTCTTAGAGATTTTATATCTGAACGGCGTGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTCGACAATCAGTGAGCAACTCTGAACTGTATGCAGTTTACTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTGGCTTGTTATTTGGGGCTAACGTCTGGTTACAACTCTATTGAATCTGAACTAAGAAATGAGCGGTCTCTCCCTTCTTTAGGTGGGCCTCACTCCAGAAAAAGAAAGTCAACAAGAACTACAGTAGCCAACGGTTCTATGGAAAAGCGGGGAACCTTGATGAATAGTAATTGTAAGGATCCTCCTTCTGATGGTTTAAATGTGGAATGTGCTAGGGGAATATCCCAAAACCCTCTGAAATTGGAAGAAAAGAGGATTGCCACTCCTGCCCTCAACAATCTGCTGATGGACTTCCTCTACAGTTATAAATCTTGTTGGCATGACAAGATTACTGGCTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGTGTTCCTGTTCAGAATTTCATGTTCCAGTTGGGTCAACCATACTCTCAATGTCAAAACTTTGTAAAGTTGTGAGTCAAACCAATGAAGAAGGTGGGAGAAAAACCAATGGTAGTATGGATTTAGATGACGATGAAAGTCTCCAAATGATGCTTTTAGACCCTTGTGTGCCAATGGAAAATGATATCCTAAGTGACTTTGCAAGCTGCTTGGTTGAGGCTCGTGACACTCATACATTAGATGTATTACACCCTGTTGCTAGTTCAGTTCAAGATAACTTAGGGTTTAATGATGGCATTGGTGAAATTTTGGTGGAAGAGCGGTCATCATTCTCTGCATGGAGAGTCATTTCTCAAAAGCTAGTTAATGCTTGCAAGGATATCTGCAAACAGAAAGGAACTCAAAAGTTCTATTGTAACCATGTTGATAAATGGGATTTAAGGAATGGAAAAAGTGATGCATACATTACTTTGTTGGATAAATTTTGTGGTTCTTTTGGTTCAGTTGGCATCCCAGATGTAATTTATGCAGACAATGATCTGGAAGGTATCTACGAGGCATTGGGAAAATGGCTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTGTTGGAACAGCTTCCTGGTGTCCAAGACTCTTTGCAGTATGAACTTCTAAATAATAGAAATAATAGCTCATTATTGCCAACAGTAGAAAATGGTTTCCTAGTGGTTGAACTGATAGATGGATCAAAATATAAGGAAGAAGCAGTTCAAGCTTTATATGGAAGGTCCACAAAGGTGACTGAAAAAAGCATTAAGGTAGGTCGTCATCCACCACTTGGGAAGCCAGTATGTTCTAGGGCTCCTGGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAAAGAGATTTCATGAAATTCTGGACCTGAAAGAACCATTGACATTAGATGATCTTGAGAAAGAACTCATTAACCCTTGGTTTGATGGATCAGATTTTCTTGAGAAATCTGAGAGGGACATGGATGGAAGTCAAGTTTTAATTTCCCAAGGAGCTGATGGTAATTTGTCCTCAAGATGTGAAGCTGATCCATCAGGTTCCATAGAAAGTTCTCATGCATTTATTCAAGTGGAAACAGAAGCAATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCTTCAACATATGCCAGATGCTTTGGTGTAGCTTTGACCAAGGCTCATAATTCATTGCTAAGAGTGCTAATAGGTGAATTGCTGTCAAAGGTGGCTGCCCTGGTAGATCCAAATTCTGAACCTGGAGAATCAAGAACAAGACGGGGAAGAAGGAAAGATATGGATAGTGCAGTTCCTGCTAAACGAACCAAGGTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGTAGGTATATGTTGGCTTTTTTGTCAATGGATGGTAACCTTGAGTCTGCAGAAATTACTGCTCGCGAAAGTGGTAAAGTATTTCGTTGCTTACGTGGTGATGGTGGTTTGTTGTGTGGTTCTCTTACTGGTGTGGCTGGAATGGAAGCAGATGCACTGCTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTAAGCAGAGAAAATGATGTACTAACCATGGAAGAAGAGTCTAATGCAAAGGGTGCTTCTGAATTTTTTTTGGCAAATGATGGTAATGTTCCTGAATGGGCACAGTTGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGAACCCGAATCAGAAAGTGTGTTTATGAGGCTCTGGAAAAGAATCCACCAGAATGGGCAAGGAAAATGCTGCAGCATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACTAAGAAAGCAGTTCTTTCCGTGCTGGCTAAAGTTGGTGATGAAGGATTGCAATTGAATCCCAATAAAGTACAGAAAAAGAAAATTATTATATCAATTTCTGACATTATCATGAAACAATGCCGCATTGTATTACGTCGTGCTGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTAATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTAGCCCGTCCTCTTGACTTCCGCACTATTGACCTACGATTAGCTACCAGAGCTTATGGTGGATCTCATGAAGCTTTTCTAGAGGATGTTCGCGAGCTGTGGAACAATGTCTGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGAACTGGCTGAAAAATTATCCCAAAACTTTGAATCATTGTATAATGAAGAGGTTCTCACCTTTGTCCAAAAATTTGTGGAGTATGCTAAACTGGAATGCATAAGTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAACAAATGAGATTCCGAAGGCCCCTTGGGATGAGGGAGTATGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAGGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTAAAAAGATTATTGGCAAACGTCGAAGTAAAAAGTTCCAGGGAGAGGTCAATTCTCTATACTTGGAATCTCTAACTCATTTATCAGCTGTAATTGAAGAAAAAGAATACTGGGAGTACAGCATAGGCGAGAGAGCTTTCCTTCTAAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTGATTCGCCAGCACCTTGAGCAATGTACAGAGTTGTCTGCTGAGTTACATCAGAAATTGCGTGCACACTCTGCAGAGTGGAAAAGCCTGAAAACTAGAGAGGATATCTTATCAACAAAAGCTGCCAAAATTGATACATTCTCACTAAATACTGCTGGAGAAGTTGGTCTTAAGGAAGGGTTTGCTTCTTTATTATCAAATACTGGTAAATGCCTGCTCCAGTCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGATTACCAAAGAGAAGTATAGGTTTGATAGTGTTGATAAAAGCATATCTGTGACAAATTCAGATTCTGATAGCCAAAATGTGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGCTGTGGAGTCTCAATGTACTGACAAATCCCTGAAATCTTTTCCATCGCCAAATCACATGTCTCAAGAAATAAATGGTGCTGGTGGAGCAGCTCATGTCCAGGGTAACCACCAGAAATGTGAGGGAAAGGACATACCTATTCCTGTGTCTTACCAGCAAGGAGTGCCTGTTGATGTTCCTCAGATTGCTGTGAGTGAGTCCGAACCCTACCACCTTGAGCTCAATGCCATCAAACGTGATATTTCACTATTGCAAGACTCCATAACTAGTGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATTTTTGGGTATTGATTCCATTGGTCGATTGTACTGGGCTTCAGCTTTGCCTGGAGGACGTTCGCGTATAATTGTTGATGCAAGTGCTGCATTGCTGCATGGAAGTGGAATGCTATTTAGCAGAGACTATGTGGAGAAGTTTTCTGTTCTGCAGCATTGTGCACTATCTGACAAGGATTCCTCTTTAATGTCTCAGCCTAGTAATCCTTTGGGCAATAGTTCACCGTGGACTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGATGATAGTGACCCTAAAGAAAGAGAACTGAAAGATTCCATTATGCTGGGGCCAAAATCAAGATTCCAAGAGTTCATTAATGCACAGACTGAAGATCAGGTCGAGGACCAGGGACATATTTCTATGCCAAGAAATAGAGAGAAAACAGTATCTAATTCTCTTGTTACCAAGGCAACTTCCTTGCTGGAAAAGAAATTTGGTCCCTTTGAACTGCTGAAGAAGCAAAATAGAAAGACCAGAACAACTAATGATGAAAAGCTGTTTAGGTGTGAGTGCCTAGAACCCATATGGCCTCCTAGGAAACACTGCACACATTGTCACAAAACTTTTGCAAGTGATGTTGAATTTGATGGACACCATGATGGCAAGTGTAATGCAGGTCTTCCGGCCATAGAGAAGAATAAGGATAAAAATGGATCTTCTAAAGGAAGAGGGAACATAAAATGTGATACCTCACAGGAGAAATTCAGAGCTGATGCTGAAACAGCTGTAACCTCGGTTAGTGGGTCTTCTAAGCTTAGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATACATGTTCCAAGTTTGTGACTAATGATTCCAACAAGGAACTTGTCAGAGAAATAGGTCTTATTGGTTCAGATGGTATCCCATCCTTTGTTCCTTCTGTATCTCCTTTTGTTAGTGAATATACACTCTCAGCTCAAAAGGATGAAAGAATTGTTGGTGGTGTGTCCAAAGCGTCAGAAAGCCGGGTCTCTCAGGCAAACACTGATGGAGCTGGCACATGTCTTGACCATAAATCAAGCATTTCTACTGGAAGGTTGGCTGCAAATGAAAGCAATAAATCCAACAAATCATCCTCGAGAGATGGGAAACTCTCTTTTTGTAGTCCCGCTTCAGTTATGGGAGCTGATGGCTGCTGTGTGGTTCCTTTGCCTTCTTTGAGACCATTAGTTGGAAAAGCTTCTCATATTTTGAGGCAGCTGAAGATTAATCTACTTGATATGGATGCTGCACTTCCGGCAATTGCTTTAAGACCATCAAAGGCTGAGTCAGACAGAAGACAGGCTTGGCGCACATTTGTAAAATCTGCAAAGACTATATATGAGATGATTCAGGCAACATTTGCACTGGAGGATATGATTAAGACAGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTTAGCCATTATATATGAGAAAGTGCCCAATTCAAGCTTTACTGGCAGCTCTGAACCTTCTGCCATAGTGGAACCTAAACCACTGATGAATGTGGATGCAGAAAAATTCAAAGGAAGCCGGAAGTCAACCAGGAAAAGGAAGGAATCAGATGGTTGA 6459 0.4295 MIMEHSDSTGGDRNLNAPPLPPQNHNSQDSRSGLGIDLNEIPSPSSSFPETLPDSVAVDFVRAYHDNPVPPPGGPAILPRGGSSPCAACAKPSSAAGGHHQVVVCDGCERGFHLACAGIRGGGRQAASLDEWVCGECVSAGVKSKRWPLGVKQLLDINAPPPSDAEGDGGDEEVQDLRKHTLGDNSFGANPFGAPVTNSNFNNGNAIGFQKASGVVTHAVRVGFEDILNHTQSITRSFEEALRDFISERRGVLEEGWRVEFRQSVSNSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSIESELRNERSLPSLGGPHSRKRKSTRTTVANGSMEKRGTLMNSNCKDPPSDGLNVECARGISQNPLKLEEKRIATPALNNLLMDFLYSYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFHVPVGSTILSMSKLCKVVSQTNEEGGRKTNGSMDLDDDESLQMMLLDPCVPMENDILSDFASCLVEARDTHTLDVLHPVASSVQDNLGFNDGIGEILVEERSSFSAWRVISQKLVNACKDICKQKGTQKFYCNHVDKWDLRNGKSDAYITLLDKFCGSFGSVGIPDVIYADNDLEGIYEALGKWLEQDRFGLDVEFVQEVLEQLPGVQDSLQYELLNNRNNSSLLPTVENGFLVVELIDGSKYKEEAVQALYGRSTKVTEKSIKVGRHPPLGKPVCSRAPGELIGDIFQAWELLKRFHEILDLKEPLTLDDLEKELINPWFDGSDFLEKSERDMDGSQVLISQGADGNLSSRCEADPSGSIESSHAFIQVETEAMKEAAQVKLASSTYARCFGVALTKAHNSLLRVLIGELLSKVAALVDPNSEPGESRTRRGRRKDMDSAVPAKRTKVNMLPINELTWPELARRYMLAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLTMEEESNAKGASEFFLANDGNVPEWAQLLEPVRKLPTNVGTRIRKCVYEALEKNPPEWARKMLQHSISKEVYKGNASGPTKKAVLSVLAKVGDEGLQLNPNKVQKKKIIISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLATRAYGGSHEAFLEDVRELWNNVCVAFGDQPDLVELAEKLSQNFESLYNEEVLTFVQKFVEYAKLECISAEMRKEVDDFIESTNEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERKKIIGKRRSKKFQGEVNSLYLESLTHLSAVIEEKEYWEYSIGERAFLLKFLCDELLNSSLIRQHLEQCTELSAELHQKLRAHSAEWKSLKTREDILSTKAAKIDTFSLNTAGEVGLKEGFASLLSNTGKCLLQSHTAVDNPSNFGVFVDSLPSEEITKEKYRFDSVDKSISVTNSDSDSQNVNSLDVEGQFRNVSGAVESQCTDKSLKSFPSPNHMSQEINGAGGAAHVQGNHQKCEGKDIPIPVSYQQGVPVDVPQIAVSESEPYHLELNAIKRDISLLQDSITSVVSQLLKLSVRREFLGIDSIGRLYWASALPGGRSRIIVDASAALLHGSGMLFSRDYVEKFSVLQHCALSDKDSSLMSQPSNPLGNSSPWTAYETDAEIEELLGWLDDSDPKERELKDSIMLGPKSRFQEFINAQTEDQVEDQGHISMPRNREKTVSNSLVTKATSLLEKKFGPFELLKKQNRKTRTTNDEKLFRCECLEPIWPPRKHCTHCHKTFASDVEFDGHHDGKCNAGLPAIEKNKDKNGSSKGRGNIKCDTSQEKFRADAETAVTSVSGSSKLSSRLIKFSNEESTCPFNFEDTCSKFVTNDSNKELVREIGLIGSDGIPSFVPSVSPFVSEYTLSAQKDERIVGGVSKASESRVSQANTDGAGTCLDHKSSISTGRLAANESNKSNKSSSRDGKLSFCSPASVMGADGCCVVPLPSLRPLVGKASHILRQLKINLLDMDAALPAIALRPSKAESDRRQAWRTFVKSAKTIYEMIQATFALEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKVPNSSFTGSSEPSAIVEPKPLMNVDAEKFKGSRKSTRKRKESDG 2152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2142 2152 MobiDBLite consensus disorder prediction 1929 1949 - -
Aed8g2142 2152 MobiDBLite consensus disorder prediction 1 52 - -
Aed8g2142 2152 Gene3D - 1074 1197 IPR036427 GO:0005515
Aed8g2142 2152 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 243 310 IPR001739 GO:0003677
Aed8g2142 2152 PANTHER OS02G0192300 PROTEIN 30 2152 - -
Aed8g2142 2152 MobiDBLite consensus disorder prediction 851 867 - -
Aed8g2142 2152 MobiDBLite consensus disorder prediction 1931 1949 - -
Aed8g2142 2152 Pfam Methyl-CpG binding domain 244 297 IPR001739 GO:0003677
Aed8g2142 2152 Pfam PHD-finger 86 139 IPR019787 -
Aed8g2142 2152 Pfam PHD-finger 1232 1278 IPR019787 -
Aed8g2142 2152 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1312 1356 IPR028942 -
Aed8g2142 2152 CDD PHD_TCF19_like 85 137 - -
Aed8g2142 2152 ProSiteProfiles Zinc finger PHD-type profile. 1230 1280 IPR019787 -
Aed8g2142 2152 ProSitePatterns Zinc finger PHD-type signature. 1233 1277 IPR019786 -
Aed8g2142 2152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1218 1301 IPR013083 -
Aed8g2142 2152 SUPERFAMILY FYVE/PHD zinc finger 1219 1282 IPR011011 -
Aed8g2142 2152 MobiDBLite consensus disorder prediction 309 330 - -
Aed8g2142 2152 SMART bromo_6 1092 1190 IPR001487 GO:0005515
Aed8g2142 2152 MobiDBLite consensus disorder prediction 2133 2152 - -
Aed8g2142 2152 CDD Bromodomain 1124 1185 - -
Aed8g2142 2152 SUPERFAMILY DNA-binding domain 244 297 IPR016177 GO:0003677
Aed8g2142 2152 ProSiteProfiles Zinc finger PHD-type profile. 83 140 IPR019787 -
Aed8g2142 2152 ProSitePatterns Zinc finger PHD-type signature. 86 137 IPR019786 -
Aed8g2142 2152 SMART PHD_3 1232 1278 IPR001965 -
Aed8g2142 2152 SMART PHD_3 85 138 IPR001965 -
Aed8g2142 2152 SUPERFAMILY Bromodomain 1067 1187 IPR036427 GO:0005515
Aed8g2142 2152 MobiDBLite consensus disorder prediction 846 867 - -
Aed8g2142 2152 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 30 2152 - -
Aed8g2142 2152 SUPERFAMILY FYVE/PHD zinc finger 85 149 IPR011011 -
Aed8g2142 2152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 143 IPR013083 -
Aed8g2142 2152 MobiDBLite consensus disorder prediction 9 52 - -
Aed8g2142 2152 CDD PHD1_Lid2p_like 1232 1277 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2142 28 2152 C2H2 Transcription Factor Family AT3G01460 44.346 0.0 1653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed8g2142 MBD 1.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2142 K22768 - gmx:100820223 3728.33