Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2139 ATGGTTGAGAGTGGTGCAAATGGGGGCAGAAGCATATCCATGAATGACTTGGAGAAGCTTCCATGTTATGACTATGTTGCCTTTGGCAACAACACAAGCAGAACTATGGATTGTGCAGTTTGCTTGGAGAACCTCATCACAGGAGATAAGTGCAGATTGTTACCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTAGACACATGGCTTCTAAAGACACCCATATGTCCAATTTGCAGGTGTAATGCTCATTCTCATAGTGGAAACCAAGTTGTAGGTAACAATAACTACTTTGTTGCGCCAAGTAGTGGGTCTAGGGAGAGCCAAACTACCACAAGAGGAAGCCTAGAAAATGTTTCATCTACAAATGTTGACATAGAAAATCCAACATTAGGAAGTCACAACTCAGCCAGAGAGTAG 420 0.4262 MVESGANGGRSISMNDLEKLPCYDYVAFGNNTSRTMDCAVCLENLITGDKCRLLPMCKHSFHAQCVDTWLLKTPICPICRCNAHSHSGNQVVGNNNYFVAPSSGSRESQTTTRGSLENVSSTNVDIENPTLGSHNSARE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2139 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 97 - -
Aed8g2139 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 85 IPR013083 -
Aed8g2139 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 97 - -
Aed8g2139 139 SUPERFAMILY RING/U-box 31 94 - -
Aed8g2139 139 SMART ring_2 38 79 IPR001841 -
Aed8g2139 139 Pfam Ring finger domain 37 80 IPR001841 -
Aed8g2139 139 MobiDBLite consensus disorder prediction 100 139 - -
Aed8g2139 139 ProSiteProfiles Zinc finger RING-type profile. 38 80 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2139 Aed-Chr8 25710402 25710821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2139 17 82 C3H Transcription Factor Family AT2G18650 45.455 2.46e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2139 - K15692 gmx:102667575 241.121