Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2134 ATGTCAGAAAACATGTTGTATCCTAGATTGTTGTTTTTTGACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAAAAAGATGGTTACTTGAGCTACTCACCACCCCTTTTGTCGTCTTCATCTGTTTCACCACCATACCCTCTTGGTGCTGCTTTCCACGAGGAATCATCATTGCCTTCTTCTTCAACACCAACACCACCACCACCATCATCTGGCACTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGCCTCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCTTCTTCTTCTGCTTCTGCATCTGCTCAATCCAACAACAGGCACCAAGAACTTTCCACATCTGATGCTCTCCAGAGGCAGCTTCAGCAGCTCTTCCACCTCCATGACTCTGGCTTGGACCAAGCTTTCATTGATGCTCTTCCTGTCTTCCACTACAAGGAGATTGTGGGGTTGAAAGAGCCTTTTGACTGTGCTGTTTGCTTGTGTGAGTTTTCTGAGAAGGATAAGCTCAGGTTGTTACCTATGTGCAGCCATGCCTTTCACATCAGTTGTATAGACACATGGCTTTTGTCAAACTCTACATGCCCTCTTTGTAGAGGAACACTTCTCACTCCAGGATTCTCTGTTGAGAACCCTATTTTTGACTTTGATGATCTGAGGGAGGATGAAGTGTGTCCTTGTAATGGGGAGAATAATGGATTCAATACTAGACAGAAAACTGTTGTGGTTGAAGAAAGTGTTGAGAAAGGTGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGATTAGTGTGGAGGGTGTGGAGAGTGAAGTGGGAGAGACAAGTAGTAGCAATTTGGATGCAAGAAGGTGTTACTCAATGGGGTCTTATCAATATGTGGTTGGCAATTCAGAACTCAGGGTGGCCTTGGACCATGATGAAAGTAAAGGTCAAGTCACAACAAGGCTCACCAAAGGAATGGAACATGATGATGTGGAAGCAAAGAAGATTAGTAGTGTTAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTGCCTAATTCTTTGGATGTTCAAATGCCATCTTATCTTAACACAGATTTTCCAAGGATGAGGGAAACAGAAGGGGCATGA 1188 0.4352 MSENMLYPRLLFFDHTHLKMAWVKHQIQQKDGYLSYSPPLLSSSSVSPPYPLGAAFHEESSLPSSSTPTPPPPSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASASAQSNNRHQELSTSDALQRQLQQLFHLHDSGLDQAFIDALPVFHYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSVENPIFDFDDLREDEVCPCNGENNGFNTRQKTVVVEESVEKGVFPVRLGKFKKISVEGVESEVGETSSSNLDARRCYSMGSYQYVVGNSELRVALDHDESKGQVTTRLTKGMEHDDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPNSLDVQMPSYLNTDFPRMRETEGA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2134 395 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 57 377 - -
Aed8g2134 395 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Aed8g2134 395 Pfam Ring finger domain 173 216 IPR001841 -
Aed8g2134 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 57 377 - -
Aed8g2134 395 SUPERFAMILY RING/U-box 153 222 - -
Aed8g2134 395 CDD RING-H2_PA-TM-RING 173 216 - -
Aed8g2134 395 SMART ring_2 174 215 IPR001841 -
Aed8g2134 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 221 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2134 Aed-Chr8 25641310 25642497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2134 76 369 C3H Transcription Factor Family AT2G18650 42.773 3.21e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2134 - - gmx:100787206 611.683