Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2076 ATGGGTGAAGAGTCAAATGATTTGGCAATTTCTCACGGGGGGCTGAATCAAGATAATTTTGAATCAGAGTTTTCGATTTTTGTTCATCCTTCGCTTTCGCTTTTGACTGTTGGCCTTTTACTAGTTAGTCCTGGTAAAGACCCCAGACGGCGTATTTTTTTGAAACGAGATCCCAGAGATTCCGAGCTACCTAAAATAAGTGTAGTTGAAATTATTGAATTCCTCAACTCCGCGCTCTCACCCTCCACCTCCAATCGTGCTTCCGTCAACAGGGCCCTCATCACCATCATGTATTACGCCAAAATGGATCACTTTGTGGATAATTTGGTGAGACATGGTGTTGTTCCTGCTCTTGTGAAGTATCTTCGAGTGCCACAGTCCACTAAAGACGACGTATTTACTGAACCTCGTCAGTATGAAGTGGAGAAAAAATGCGCACGCATTCTCGGACTATTAGCTGTTAAAATAGATATGGTATATATATTTAGGATGGAAGGTGGTATCCCTCCTCTTGTTGATTTGCTTGAATTCACTTTCACAAAGGTGTATACAGCAGCTGCATTGGCATTGGCAATTCTTGCATATAATAATGATGGCAATAAAAAACAGGGGGTTGTTATTGAAAAATTGGACCATTCGTCACCAGATATTATGAAAGAAGTGCTTCTAGCTGGGGCTTTACAACCTGTTATTTGTTTACTTAGTTCCGACTGCTGGAAGACCCAAAAGCTAGCAGCCCTTTTAATTGGTCAATTTGCTGCAACAGATTCAGATTCCAAGGTTGAGATTTCCAAAAGAGGGGTTATTCCACAATTAGTTTATATGCTCCACTCTCCAGATATACAGGTTCGGCATATGTCGGTTATTGCACTTGGGACTTTGGCACAGGAGACACATAATCAAGTTATTATTGATCGTAACAGAGGTTTAGAGCCTTTGCTCAATATTCTTGACTCAAACAAGGCTCCCCTCCAACGTGATGCTGCTTTAGTTCTCTATGGTCTTGCTGATAATGAGGGAATTGTTGCGAACATTATTAAGGCTGGTGGTTTTCAAAAACTGAAGGATGGACATTTCAAAGAACCTACTAAAGAGTGTGTAGCAGCCACTTTAAAAAGATTAGAGGAGAAGATGCAAGGGAGATCTCACTCATGGTACTTCAAAAGTATTTTGGATCAATATGCTGCTAAATATTCAGGATTAGAATTGCTGCTGGATATTCTTGATTCTCCAAGTGTAAAGCAGAAGTGTGATGCTTCAGCAGCGCTTCTCAAATTGGCTGCCAAAGTGAGTTCTTTTGTCTCTCTTTTTGATGCTTCTCCATCACCAACTCCACAGATATACTTGGGCGAGGAATATGTAAACAATGCCAAACTTTCTGTTGTCACATTCCTGGTTGAAGGTGGAGGAGCATCTACTGATAAAATTCTGTATGCTATGTATTCTGATTTTGATATATTATGTACTAATCCGTGTTTCCTTTCTTCAGGTAGAAGTTTTTATGCCCATAGAGATTGCTTACTTTCTTCAGATGTATTTCGGACAATGTTTGGTGGCGATGATAAGGTAAGCATTGATTAA 1581 0.401 MGEESNDLAISHGGLNQDNFESEFSIFVHPSLSLLTVGLLLVSPGKDPRRRIFLKRDPRDSELPKISVVEIIEFLNSALSPSTSNRASVNRALITIMYYAKMDHFVDNLVRHGVVPALVKYLRVPQSTKDDVFTEPRQYEVEKKCARILGLLAVKIDMVYIFRMEGGIPPLVDLLEFTFTKVYTAAALALAILAYNNDGNKKQGVVIEKLDHSSPDIMKEVLLAGALQPVICLLSSDCWKTQKLAALLIGQFAATDSDSKVEISKRGVIPQLVYMLHSPDIQVRHMSVIALGTLAQETHNQVIIDRNRGLEPLLNILDSNKAPLQRDAALVLYGLADNEGIVANIIKAGGFQKLKDGHFKEPTKECVAATLKRLEEKMQGRSHSWYFKSILDQYAAKYSGLELLLDILDSPSVKQKCDASAALLKLAAKVSSFVSLFDASPSPTPQIYLGEEYVNNAKLSVVTFLVEGGGASTDKILYAMYSDFDILCTNPCFLSSGRSFYAHRDCLLSSDVFRTMFGGDDKVSID 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2076 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 267 309 IPR000225 GO:0005515
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 492 520 IPR044282 -
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 206 383 IPR044282 -
Aed8g2076 526 SUPERFAMILY ARM repeat 71 356 IPR016024 -
Aed8g2076 526 Gene3D - 208 440 IPR011989 -
Aed8g2076 526 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 201 IPR000225 GO:0005515
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 492 520 - -
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 206 383 - -
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 161 204 - -
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 161 204 IPR044282 -
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 67 156 IPR044282 -
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 399 471 IPR044282 -
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 67 156 - -
Aed8g2076 526 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 399 471 - -
Aed8g2076 526 SMART arm_5 299 337 IPR000225 GO:0005515
Aed8g2076 526 SMART arm_5 256 296 IPR000225 GO:0005515
Aed8g2076 526 SMART arm_5 155 195 IPR000225 GO:0005515
Aed8g2076 526 SMART arm_5 214 254 IPR000225 GO:0005515
Aed8g2076 526 SMART arm_5 388 428 IPR000225 GO:0005515
Aed8g2076 526 SMART arm_5 101 154 IPR000225 GO:0005515
Aed8g2076 526 Gene3D - 55 207 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2076 Aed-Chr8 25113564 25117467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2076 224 436 U-box Gene Family AT2G23140 24.074 6.85e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2076 - - csv:101207702 350.517