Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2043 ATGATGAATTCAGAGAAGCCACTCAGCCCTGCAGAGAATTCAAGTGAAGAAAATGATGAAGAAGAAGCACAAGAGGACGGAACAAAACGGTCTTATGAGTGCACATTCTGCAAAAGAGGGTTCACAAATGCTCAAGCCTTAGGGGGCCATATGAATATCCATAGGAAAGACAGGGCCAAGGCCAAGCAATTCACACTAGACAACACTTGTTCATCTTCGGTTAACAAATTCAACACTCTTGACGACTCCATGCCCAATATTCCTTTTGTGTCAGAAATTTTAAACCAACCCACCACGAGACCTAATTACACTACTACCCTTTTGGAGTCTCATCAGAGGAGCCATCCACCACATGGCTTTTATTGTGAGTTCTATAACTCAAGATCTCGGCCTTTGAGTTTGAACCAAGAGCTTCGAGGTGCCAATTTGAGTCTCCAAATTGGTCCAAGTACTCATGTTGGTGATAACACCAGCAGGAGAGGAAATCAGAAAGATAGTGAAGTGGACTTGGAGCTCAGACTTGGCCATGATCCATACTGA 540 0.437 MMNSEKPLSPAENSSEENDEEEAQEDGTKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQFTLDNTCSSSVNKFNTLDDSMPNIPFVSEILNQPTTRPNYTTTLLESHQRSHPPHGFYCEFYNSRSRPLSLNQELRGANLSLQIGPSTHVGDNTSRRGNQKDSEVDLELRLGHDPY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2043 179 MobiDBLite consensus disorder prediction 146 168 - -
Aed8g2043 179 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 10 178 - -
Aed8g2043 179 SUPERFAMILY beta-beta-alpha zinc fingers 29 59 IPR036236 -
Aed8g2043 179 PANTHER OS07G0101800 PROTEIN 10 178 - -
Aed8g2043 179 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Aed8g2043 179 Pfam C2H2-type zinc finger 32 56 - -
Aed8g2043 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Aed8g2043 179 MobiDBLite consensus disorder prediction 1 29 - -
Aed8g2043 179 Gene3D Classic Zinc Finger 11 83 - -
Aed8g2043 179 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2043 Aed-Chr8 24824746 24825285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2043 30 94 C2H2 Transcription Factor Family AT3G53820 49.296 2.39e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g2043 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2043 - - gmx:102669921 229.565