Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2018 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGAAGTGGGTCGTTTGGGGAGCTTTACTTAGGTGAATCTGTGAAGACCAAGCACCCACAGCTTCACTATGAGTCAAAGTTGTATATGCTTCTTCAAGGGGGAACTGGTATACCCCATCTAAAATGGTTTGGAGTTGAGGGTGATTACAATGTCATGGTTATTGACCTCCTTGGGCCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAATTGACTCTGAAAACAGTTCTGATGCTGGCAGATCAGTTAATAAACAGAGTTGAGTACATGCACTCCCGTGGGTTTCTGCATCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGTAAGGCAAATCAGGTATACATAATTGATTATGGCCTGGGAAAAAAGTTTCGGGATCTTCAAACTCATAAGCATATACCATACAGGGAAAACAAAAATCTCACTGGAACTGCTCGATATGCAAGTGTTAATACTCATCTGGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCTCTTGGATATGTGCTCATGTATTTTTTGAGAGGAAGTCTCCCATGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAATATGACAAGATAAGTGAGAAGAAGATGCTTACTCCAATAGAGGTCTTATGCAAGTCTTATCCATTGGAATTCACATCATACTTCCACTATTGCCGATCGTTGCGGTTTGAAGATAAGCCTGATTATTCTTATCTTAAGAGACTCTTTCGGGACCTATTCATCCGAGAAGGGGGTTTCTCAGGTGCAGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGACTTGGTCTGCATAGTGACCATTCTAGGCATAGGTCTTCAAATGACGTGTCATCTTCCAAAGACGTGCAAGCTGATTCTGAGCGGCCTCGCAGCTCTTCTCGTAATGGCAGTTCTTCAAAAAAGCCCGTCTTGTCAAGCAGCCGGCCAAGCTCATCTGGTGAGCCTAGTGAAAGCCGTACTAGCCGACTGGTCTCAAGCAGTGGCCGACTATCAACAACTCAGAGACTTCAACCTGGTTTTGAGTCCAAAACATCTTTAACTCGGGTTTCTGCAACAAGAGGTGGTCGTGATGATACACTCAGGAGCTTTGAACTCCTGTCACTTGGTTCAGGAAAAAGGAAATGA 1197 0.4327 MDHVIGGKFKLGRKIGSGSFGELYLGESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLGKKFRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGGFSGAVEAFARRNGSGLGLHSDHSRHRSSNDVSSSKDVQADSERPRSSSRNGSSSKKPVLSSSRPSSSGEPSESRTSRLVSSSGRLSTTQRLQPGFESKTSLTRVSATRGGRDDTLRSFELLSLGSGKRK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2018 398 SMART serkin_6 9 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g2018 398 MobiDBLite consensus disorder prediction 286 312 - -
Aed8g2018 398 PANTHER CASEIN KINASE-RELATED 1 273 - -
Aed8g2018 398 PANTHER CASEIN KINASE-RELATED 283 385 - -
Aed8g2018 398 ProSiteProfiles Protein kinase domain profile. 9 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g2018 398 Pfam Protein kinase domain 35 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g2018 398 SUPERFAMILY Protein kinase-like (PK-like) 4 268 IPR011009 -
Aed8g2018 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Aed8g2018 398 Gene3D Transferase(Phosphotransferase) domain 1 1 328 - -
Aed8g2018 398 MobiDBLite consensus disorder prediction 313 376 - -
Aed8g2018 398 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 273 - -
Aed8g2018 398 MobiDBLite consensus disorder prediction 285 381 - -
Aed8g2018 398 PANTHER CASEIN KINASE I-LIKE PROTEIN 283 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2018 Aed-Chr8 24620978 24626511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2018 78 268 MAP Kinase Kinase Kinase AT1G62400 28.426 5.15e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Aed8g2018 Pkinase 3.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2018 K08960 - gmx:100804897 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g2018 8 24620978 24626511 Aed8g2018 8 24620978 24626511 ECH