LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g2017	ATGGATAGGTGCTGGTTTAATAAGTCCAAGCCAAAGGATAAAACACAGTCTTTAAAAAACAAGGAAACTACAGGCCCTGCAAAAGAAAGGTCAAAACCCCCAACAAATGAAGAAGCACCTTCCAATGTGACCAAACAGAAGGTTGCAGCTGCAAAGCAGTACATAGAAAACCATTATAAAAAACAGATGAAGGACTTGCAGGAGAGAAAGGAACGGAAAGGGTGCATTTGGAGAGCTGAGAGGAATCTACTTGCAGAAGTTGACAGCAATTGCATTGTAAAGCTTTATTGTTCCTTTCAAGATGAAGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGTGATATGATGACGTTGCTCATGCGGAAGGATATACTGACTGAAGACGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTATCTATAGAGTCGATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAGATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTATTGGAAGCAACAGAAGTGGAGTCCTTCAGAGCGATGGACGTCCTTTGGCTCCTAAAAGAAGTCAACAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACAGTTGGAACACCTGACTATATTGCCCCTGAAGTTCTTCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCCCTGGGAGCGATAATGTATGAAATGCTAGTGGGGTATCCACCCTTTTATTCAGATGAACCAATGCTGACTTGTAGAAAGATAGTAAATTGGAGAAATTATTTAAAATTTCCAGAAGAAGTTAAACTGTCAGCAGATGCAAAGGATCTTATTAATAAACTGCTATGTAGTGTGGACCAGAGGCTTGGAACCAAGGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAATGGGACAAATTGTACCAGATGAAAGCTGCTTTTATTCCTGAGGTTAATGATGAGTTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGTTGACAACCAAACTCAACCTTCCTCAAAATCCGGCCCATGGAGAAAGATGCTGTCGTCTAAAGATGTCAACTTTGTTGGGTACACATATAAGAACTTTGAAATCATAAATGATCATCAACTACCTGAAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAGAGGCCATCTATTAAGACCCTATTTGATGATGAATCGGCTACAGTTGCCAATCCACCTGCCCAAGGGAGCTTCTTAAAACTCTTGCCTACTCAACTGGAAGTTCCTGAGAAGAGTGAATCTCAATGA	1383	0.4035	MDRCWFNKSKPKDKTQSLKNKETTGPAKERSKPPTNEEAPSNVTKQKVAAAKQYIENHYKKQMKDLQERKERKGCIWRAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLSIESIHKHNYIHRDIKPDNLLLDRDGHMKLSDFGLCKPLDCSNLQEKDFSIGSNRSGVLQSDGRPLAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRNYLKFPEEVKLSADAKDLINKLLCSVDQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDNQTQPSSKSGPWRKMLSSKDVNFVGYTYKNFEIINDHQLPEIAELKKKSTKPKRPSIKTLFDDESATVANPPAQGSFLKLLPTQLEVPEKSESQ	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed8g2017	460	Gene3D	Phosphorylase Kinase; domain 1	61	115	-	-
	Aed8g2017	460	Pfam	Protein kinase domain	61	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed8g2017	460	SMART	serkin_6	18	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed8g2017	460	MobiDBLite	consensus disorder prediction	1	35	-	-
	Aed8g2017	460	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468
	Aed8g2017	460	ProSiteProfiles	Protein kinase domain profile.	1	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed8g2017	460	SUPERFAMILY	Protein kinase-like (PK-like)	70	384	IPR011009	-
	Aed8g2017	460	MobiDBLite	consensus disorder prediction	1	45	-	-
	Aed8g2017	460	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	78	434	-	-
	Aed8g2017	460	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	39	73	-	-
	Aed8g2017	460	SMART	pkinase_C_6	332	396	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Aed8g2017	460	Pfam	Protein kinase C terminal domain	350	394	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Aed8g2017	460	ProSiteProfiles	AGC-kinase C-terminal domain profile.	332	404	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Aed8g2017	460	CDD	STKc_NDR_like	78	395	-	-
	Aed8g2017	460	Gene3D	Transferase(Phosphotransferase) domain 1	223	351	-	-
	Aed8g2017	460	Gene3D	Transferase(Phosphotransferase) domain 1	116	194	-	-
	Aed8g2017	460	PANTHER	SERINE/THREONINE-PROTEIN KINASE	78	434	-	-
	Aed8g2017	460	PANTHER	SERINE/THREONINE-PROTEIN KINASE	39	73	-	-
	Aed8g2017	460	MobiDBLite	consensus disorder prediction	430	460	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g2017	Aed-Chr8	24611263	24620138	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g2017	3	73	AGC Kinase Gene Family	AT3G23310	61.111	1.17e-12	68.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Aed8g2017		Pkinase	1.1e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g2017	K08790		-	gmx:100805439	753.051

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed8g2017	8	24611263	24620138	Aed8g2017	8	24611263	24620138	ECH