Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2014 ATGGGAACGCCGAAGGAATCAAAGCCCTTCACAGGCAAGTGGAGGGACAAAGATGCAAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCAGCTTTATAATGTTGCCAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATATCGTCCTGGTCGTCATGGTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCTTTGATAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATGCTTTGGTTTTGAATGATGATTGTCTAACTGCTCATGAGGTTGCCAGGGCCAAAGGGCACAGCAATGTTGTTCGTGCAATTGAGAATCATCTATGCTTGTTCTCTGGTTGGTTGCGCGAGTTTCATGGACCTGGATTTCTAGAAGTAGTAGCTCCTCAGTTGGTATCGAAAAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCCCGTACTCTTACCAAACCTTACAAGTTGGAGCTTGCCATATATTCTAGTTTGCAGGAGGCACAACCACGTACAGTTATTGCACTGTCCAAAGCCAATTTACAAGAACCAAAGCTTCATCAGTCTGATCCGTCAGTGACAATTGCAAGTCCAGCATTCTTGCAAAACAATGTGCCTACAGGTCCACCCACAGCACCACCAGATGCAGAAGACACAGAGTTGGCTATGGCCATCAGTGCATCCCTTCAGTCTGCTATGCAGGAGAGACCACCCTTTCTTGATACACAGCCAAACTTTAATGCAAGCTCTTCAAGCAGTGCAGTGAATACAGGCAATCATAGTTTTCTTGGCACACAAAATCCAAATTTAAGTGATAGTGAGTTGGTACAAGAAGCTAATCCAGATGGCAATACTCTGCACCCCCAGAACCATGTGAATGTCAGTGCTTTGGATTTCAATCCATTGGCTCCGCCAATCGCCAATGAGATTCCAGCAAGTGGTCCCATTCAGTATCCATCAATTGATTTAAGCCCTGTTGATATGGCAGAAAAAACTGGTGGTGGAAGTGCTTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCTTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAGATAAACCAAGTCATAAAGCTATATCATGTTTGA 1176 0.4447 MGTPKESKPFTGKWRDKDAKTPLIVACMNPQLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFDSIVKLLLLHGANALVLNDDCLTAHEVARAKGHSNVVRAIENHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVVVLPVGSRTLTKPYKLELAIYSSLQEAQPRTVIALSKANLQEPKLHQSDPSVTIASPAFLQNNVPTGPPTAPPDAEDTELAMAISASLQSAMQERPPFLDTQPNFNASSSSSAVNTGNHSFLGTQNPNLSDSELVQEANPDGNTLHPQNHVNVSALDFNPLAPPIANEIPASGPIQYPSIDLSPVDMAEKTGGGSASSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRAKINQVIKLYHV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2014 391 MobiDBLite consensus disorder prediction 237 290 - -
Aed8g2014 391 ProSiteProfiles Ankyrin repeat profile. 18 51 IPR002110 GO:0005515
Aed8g2014 391 ProSiteProfiles Ankyrin repeat profile. 54 86 IPR002110 GO:0005515
Aed8g2014 391 SUPERFAMILY Ankyrin repeat 14 112 IPR036770 -
Aed8g2014 391 ProSiteProfiles Ankyrin repeat region circular profile. 18 48 - -
Aed8g2014 391 Pfam Zinc finger, C3HC4 type (RING finger) 338 385 - -
Aed8g2014 391 Gene3D - 11 57 IPR036770 -
Aed8g2014 391 SUPERFAMILY RING/U-box 339 385 - -
Aed8g2014 391 SMART ANK_2a 18 48 IPR002110 GO:0005515
Aed8g2014 391 SMART ANK_2a 54 83 IPR002110 GO:0005515
Aed8g2014 391 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 13 197 - -
Aed8g2014 391 PANTHER ROLLING PEBBLES, ISOFORM B 208 391 - -
Aed8g2014 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 391 IPR013083 -
Aed8g2014 391 ProSiteProfiles Ankyrin repeat region circular profile. 54 80 - -
Aed8g2014 391 ProSiteProfiles Zinc finger RING-type profile. 340 379 IPR001841 -
Aed8g2014 391 PANTHER ROLLING PEBBLES, ISOFORM B 13 197 - -
Aed8g2014 391 Pfam Ankyrin repeats (many copies) 39 95 IPR002110 GO:0005515
Aed8g2014 391 Gene3D - 58 111 IPR036770 -
Aed8g2014 391 SMART ring_2 340 378 IPR001841 -
Aed8g2014 391 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 208 391 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2014 335 388 C3H Transcription Factor Family AT3G06140 33.333 1.61e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2014 - - gmx:100805974 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g2014 8 24585422 24590211 Aed8g2014 8 24585422 24590211 ECH