Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2011 ATGGTGAGAGCTCCTTGTTGTGAAAAAATGGGTTTGAAGAAGGGTCCTTGGGCTCCCGAGGAAGATCAAATCCTCACTTCTTACATCGACAAACATGGCCATGGCAATTGGCGTGCCCTCCCTAAACAAGCAGGCTTGTTAAGGTGTGGGAAAAGCTGCAGATTGCGCTGGATTAACTATTTGAGGCCTGATATCAGGAGAGGAAATTTCACAGTTGAAGAAGAAGAAACCATCATTAAGCTGCATGAGATGCTTGGGAACAGGTGGTCAGCAATAGCAGCACAATTGCCAGGAAGAACTGACAATGAAATAAAAAATGTTTGGCACACCAATTTGAAGAAGAGGCTGCTAATGACACCAGACCAGTGCAAACCAATTTCCAAAAGAGCCACTAAGCCAAAAATTAAACGTTCTGATTCCAATTCCAGCATCATAACTCAATCAGAACATTCTGCCACCAACCTTAATAATTTCAGAGAAATCATGGACACAACAACAACAACATCGTCAGCATGCACTACTACTACTACAACTTCTAGTGATTTTTCATCAGTCACGGTTGGTGATAGCAAAAACAATATAAAGTGTGAAGACATAGAGTCTCTTGAGACAATGCCTGTGATTGATGAGAGCTTTTGGTCAGAAGCTGCTGCAATTGAAGAAAGTGAAACCACCCCCACCATGTCATCACAACAACAATCTTTGACAATCTCAAATGAGATGCCACTTCAAATTCAATACCCTTTTGCTAACTATGAAGAAACTTTCCAACAGATCAGTCATCATGCTTATGATTCAAACTTTGATGATGGCATGGATTTCTGGTACGACATATTCACCAGGACCACGGATTCAGTTGAATTGCCAGAGTTCTGA 876 0.4144 MVRAPCCEKMGLKKGPWAPEEDQILTSYIDKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIRRGNFTVEEEETIIKLHEMLGNRWSAIAAQLPGRTDNEIKNVWHTNLKKRLLMTPDQCKPISKRATKPKIKRSDSNSSIITQSEHSATNLNNFREIMDTTTTTSSACTTTTTTSSDFSSVTVGDSKNNIKCEDIESLETMPVIDESFWSEAAAIEESETTPTMSSQQQSLTISNEMPLQIQYPFANYEETFQQISHHAYDSNFDDGMDFWYDIFTRTTDSVELPEF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2011 291 CDD SANT 69 112 IPR001005 -
Aed8g2011 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed8g2011 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed8g2011 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 283 - -
Aed8g2011 291 CDD SANT 16 61 IPR001005 -
Aed8g2011 291 SMART sant 13 63 IPR001005 -
Aed8g2011 291 SMART sant 66 114 IPR001005 -
Aed8g2011 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed8g2011 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed8g2011 291 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed8g2011 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed8g2011 291 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Aed8g2011 291 Gene3D - 11 67 - -
Aed8g2011 291 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 283 - -
Aed8g2011 291 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2011 Aed-Chr8 24573264 24575495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2011 1 291 MYB Transcription Factor Family AT2G31180 45.485 1.39e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed8g2011 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2011 K09422 - gmx:100807569 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g2011 8 24573264 24575495 Aed8g2011 8 24573264 24575495 ECH