Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g2005 ATGATGCAAAACTGGCGTTTTGGTGACATGCACCATGCGAGCTACGTGAGTACGGAGGTGCCTTTGTTGTTGTTTGTTTACGAGAGTGTGTTCTTATTGTTATATATAAAGACAATAACAATGACAATGAGAGGGGCGAAGCTTAGCTATGAGAAGCTCTCAGCATGCTTGACGTGTCCTTTGTGCAATAGATTTTTCAGAAACGCCACCACAATATCAGAATGCTGCCATAGTTTGAATATTGTTCATTATTTTTCTTTTCCATCTACCTTTATGGAATGCATAGACAAGAAGTTAATAGATGAGAAATTAATGCACTGTCCAATATGCAATAGAGACTTGGGTTGTTCTCCACTCGATAAATTAAGGTCAGATCCCTGTCTGCAAGATTTGAGGGATAAAATTTTCCCATTCGAAGAACAAAAAGCTTCAGTCAAATTGAACATAAAAAGAAAGAAGAATTCTCTATCAATAGAAAAAGCTGCTGCTTCAAAACCTGATAAAGCAGAAGATGAAAACCATGGTGGAGTAGAAATTGTTCTGGAAGAAGCTTCTAGTTCTACAATAGGATCCGCAAGAAGAGCCAGAGCTGCAGCTAGAGCCAAATTCACTTGCTCAGCATCACCATCTCCTTCTTGTCAACTTGGCAAAGTAGTAGCAGAAGAAGAAAAGAAAGATGGTGGTCGTCCCCGGGTTGAAACTTCGAACGGAAGTCTCAGAATCAAAATTCCGGTAAAGAGTTCAAGTCAACAATCAGAGGCCAACAAGAGGGACAGTGCTGAGTTTAGGAATAAAACGGATGATGATGATGATATGTCTCAACCATTAAATTCCCTGGTGGAATCTGCAAGCAAAAAGTCTCGTAGAAAGTCCACCATGCAAGAAAATTGTGTTGTAGTTGTGCGCTCCAATGACAATGCTACTGATCAAAATGAACCAACTCCTTCAAACTCTGATTCAGTCCAACACCACCAAGAGAAAAAACTCAGAATCTCTGAGGACTTGAATTTTCCTGCACAACCTGAGGTTGGTTCCAACAAAGGATTTGGTCCAATATGGTTCTGCTTGGTTGCTGCTGAAGAGAAGGCAGCAAGTGTACAGTTGCCACAATTATCTTCCAGCTACCTAAGGGTGGAGATCACATTACAAGGGCGAGCACTTTTATCTTCATTGCAACTCAGAAACATAGTAGACATGTGGTTGCAAACAGTGCCACAGAATGAGATTAAAACATCTGTTGGAAGCTCAGCCAAGGATTTTATTATGGTCCTTTCATATGGTCGAAAGCCTTAA 1293 0.4053 MMQNWRFGDMHHASYVSTEVPLLLFVYESVFLLLYIKTITMTMRGAKLSYEKLSACLTCPLCNRFFRNATTISECCHSLNIVHYFSFPSTFMECIDKKLIDEKLMHCPICNRDLGCSPLDKLRSDPCLQDLRDKIFPFEEQKASVKLNIKRKKNSLSIEKAAASKPDKAEDENHGGVEIVLEEASSSTIGSARRARAAARAKFTCSASPSPSCQLGKVVAEEEKKDGGRPRVETSNGSLRIKIPVKSSSQQSEANKRDSAEFRNKTDDDDDMSQPLNSLVESASKKSRRKSTMQENCVVVVRSNDNATDQNEPTPSNSDSVQHHQEKKLRISEDLNFPAQPEVGSNKGFGPIWFCLVAAEEKAASVQLPQLSSSYLRVEITLQGRALLSSLQLRNIVDMWLQTVPQNEIKTSVGSSAKDFIMVLSYGRKP 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g2005 430 MobiDBLite consensus disorder prediction 293 320 - -
Aed8g2005 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 378 429 - -
Aed8g2005 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 46 378 - -
Aed8g2005 430 MobiDBLite consensus disorder prediction 206 328 - -
Aed8g2005 430 MobiDBLite consensus disorder prediction 256 272 - -
Aed8g2005 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 378 429 IPR044807 GO:0004842
Aed8g2005 430 MobiDBLite consensus disorder prediction 240 255 - -
Aed8g2005 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 46 378 IPR044807 GO:0004842
Aed8g2005 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g2005 Aed-Chr8 24539831 24543083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g2005 46 378 C3H Transcription Factor Family AT2G30580 28.134 7.56e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g2005 K16277 - gmx:102669950 380.178